RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 C21orf2O43822 256 aa8.84□□□□□ -0.99
CCDC88A-213ENST00000476903 MBTPS1Q14703 1052 aa8.84□□□□□ -0.99
CCDC88A-213ENST00000476903 SOGA3Q5TF21 947 aa8.84□□□□□ -0.99
CCDC88A-213ENST00000476903 PRPF40BQ6NWY9 871 aaKnown RBP8.84□□□□□ -0.99
CCDC88A-213ENST00000476903 TTLL7Q6ZT98 887 aa8.84□□□□□ -0.99
CCDC88A-213ENST00000476903 NBPF11Q86T75 865 aa8.84□□□□□ -0.99
CCDC88A-213ENST00000476903 IBTKQ9P2D0 1353 aaPredicted RBP8.84□□□□□ -0.99
CCDC88A-213ENST00000476903 KRTAP4-8A0A0G2JLE6 195 aa8.83□□□□□ -1
CCDC88A-213ENST00000476903 KLRG2A4D1S0 409 aaPredicted RBP8.83□□□□□ -1
CCDC88A-213ENST00000476903 NFKBIEO00221 500 aa8.83□□□□□ -1
CCDC88A-213ENST00000476903 HOXB7P09629 217 aa8.83□□□□□ -1
CCDC88A-213ENST00000476903 NPR1P16066 1061 aa8.83□□□□□ -1
CCDC88A-213ENST00000476903 CALD1Q05682 793 aaKnown RBP8.83□□□□□ -1
CCDC88A-213ENST00000476903 LRRC69Q6ZNQ3 347 aa8.83□□□□□ -1
CCDC88A-213ENST00000476903 LRP10Q7Z4F1 713 aa8.83□□□□□ -1
CCDC88A-213ENST00000476903 SCHIP1Q9P0W5 487 aaPredicted RBP8.83□□□□□ -1
CCDC88A-213ENST00000476903 UBN2Q6ZU65 1347 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 LTBP3Q9NS15 1303 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 RIC1Q4ADV7 1423 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 APAF1O14727 1248 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 GPTP24298 496 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 VAC14Q08AM6 782 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 TEAD4Q15561 434 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 KRT24Q2M2I5 525 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 PROSER3Q2NL68 480 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 PARP10Q53GL7 1025 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 PPP1R42Q7Z4L9 355 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 ZNF34Q8IZ26 560 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 TAOK3Q9H2K8 898 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 NMRK2Q9NPI5 230 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 DDX21Q9NR30 783 aaKnown RBP eCLIP8.82□□□□□ -1
CCDC88A-213ENST00000476903 ABCC12Q96J65 1359 aa8.82□□□□□ -1
CCDC88A-213ENST00000476903 CEP350Q5VT06 3117 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 C9orf172C9J069 976 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 TOMM70O94826 608 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 ANXA1P04083 346 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 ALDH1B1P30837 517 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 ADH7P40394 386 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 PRELPP51888 382 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 EPHA4P54764 986 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 CRY2Q49AN0 593 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 CCDC93Q567U6 631 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 HDGFL1Q5TGJ6 251 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 SUSD4Q5VX71 490 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 C16orf71Q8IYS4 520 aaPredicted RBP8.81□□□□□ -1
CCDC88A-213ENST00000476903 SSBP4Q9BWG4 385 aaPredicted RBP8.81□□□□□ -1
CCDC88A-213ENST00000476903 IFT57Q9NWB7 429 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 LAMB2P55268 1798 aa8.81□□□□□ -1
CCDC88A-213ENST00000476903 GLTPD2A6NH11 291 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 ANP32CO43423 234 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 NTSR2O95665 410 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 ZNF853P0CG23 659 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 HSPA6P17066 643 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 GNAI1P63096 354 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 AIMP1Q12904 312 aaKnown RBP8.8□□□□□ -1
CCDC88A-213ENST00000476903 HSP90AB3PQ58FF7 597 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 DUSP27Q5VZP5 1158 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 COPS6Q7L5N1 327 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 XAGE3Q8WTP9 111 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 RPGRQ92834 1020 aaKnown RBP8.8□□□□□ -1
CCDC88A-213ENST00000476903 CHPF2Q9P2E5 772 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 DBF4Q9UBU7 674 aaPredicted RBP8.8□□□□□ -1
CCDC88A-213ENST00000476903 WDR90Q96KV7 1748 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 RNF123Q5XPI4 1314 aa8.8□□□□□ -1
CCDC88A-213ENST00000476903 NOS2P35228 1153 aa8.79□□□□□ -1
CCDC88A-213ENST00000476903 SPEM2Q0P670 501 aa8.79□□□□□ -1
CCDC88A-213ENST00000476903 CCDC184Q52MB2 194 aa8.79□□□□□ -1
CCDC88A-213ENST00000476903 RTKN2Q8IZC4 609 aa8.79□□□□□ -1
CCDC88A-213ENST00000476903 LENG1Q96BZ8 264 aaPredicted RBP8.79□□□□□ -1
CCDC88A-213ENST00000476903 UTP14AQ9BVJ6 771 aaKnown RBP8.79□□□□□ -1
CCDC88A-213ENST00000476903 A0A0A0MRY4 1105 aa8.78□□□□□ -1
CCDC88A-213ENST00000476903 HOXA10P31260 410 aaPredicted RBP8.78□□□□□ -1
CCDC88A-213ENST00000476903 FKBP4Q02790 459 aaKnown RBP eCLIP8.78□□□□□ -1
CCDC88A-213ENST00000476903 TCIRG1Q13488 830 aa8.78□□□□□ -1
CCDC88A-213ENST00000476903 RAB44Q7Z6P3 723 aaPredicted RBP8.78□□□□□ -1
CCDC88A-213ENST00000476903 TXNRD3Q86VQ6 643 aa8.78□□□□□ -1
CCDC88A-213ENST00000476903 PLBD2Q8NHP8 589 aa8.78□□□□□ -1
CCDC88A-213ENST00000476903 RBM17Q96I25 401 aaKnown RBP8.78□□□□□ -1
CCDC88A-213ENST00000476903 MRS2Q9HD23 443 aa8.78□□□□□ -1
CCDC88A-213ENST00000476903 HYPKQ9NX55 129 aa8.78□□□□□ -1
CCDC88A-213ENST00000476903 GPC6Q9Y625 555 aaPredicted RBP8.78□□□□□ -1
CCDC88A-213ENST00000476903 CACNA1FO60840 1977 aa8.78□□□□□ -1
CCDC88A-213ENST00000476903 SCN4AP35499 1836 aa8.77□□□□□ -1
CCDC88A-213ENST00000476903 DDX60Q8IY21 1712 aaKnown RBP8.77□□□□□ -1
CCDC88A-213ENST00000476903 ELNP15502 786 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 VEGFAP15692 232 aaPredicted RBP8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 FSTL1Q12841 308 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 CCDC27Q2M243 656 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 SLC10A5Q5PT55 438 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 SH3PXD2AQ5TCZ1 1133 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 SHISA2Q6UWI4 295 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 NLRP10Q86W26 655 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 CRAMP1Q96RY5 1269 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 CHMP4AQ9BY43 222 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 GOLGA2P5Q9HBQ8 144 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 ZNF358Q9NW07 568 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 SH3TC1Q8TE82 1336 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 TAF1P21675 1872 aa8.77□□□□□ -1.01
CCDC88A-213ENST00000476903 PIK3CDO00329 1044 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 203.1 ms