RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 NPLOC4Q8TAT6 608 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 ZNF594Q96JF6 807 aaPredicted RBP6.2□□□□□ -1.42
USP4-209ENST00000475873 MRIQ9BWK5 157 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 TSPYL2Q9H2G4 693 aaPredicted RBP6.2□□□□□ -1.42
USP4-209ENST00000475873 PICK1Q9NRD5 415 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 TMOD2Q9NZR1 351 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 PNMA3Q9UL41 463 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 TACC3Q9Y6A5 838 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 NDUFB9Q9Y6M9 179 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 FASNP49327 2511 aaKnown RBP6.2□□□□□ -1.42
USP4-209ENST00000475873 SPTBN2O15020 2390 aa6.2□□□□□ -1.42
USP4-209ENST00000475873 MAP1BP46821 2468 aaKnown RBP6.19□□□□□ -1.42
USP4-209ENST00000475873 POTEB3A0JP26 581 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 DDTLA6NHG4 134 aaPredicted RBP6.19□□□□□ -1.42
USP4-209ENST00000475873 FAM196BA6NMK8 535 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 PLIN1O60240 522 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 CNGA1P29973 690 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 HIBADHP31937 336 aaKnown RBP6.19□□□□□ -1.42
USP4-209ENST00000475873 RIPK4P57078 832 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 FOXO4P98177 505 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 TCF15Q12870 199 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 SPP2Q13103 211 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 MAP2K5Q13163 448 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 LRRC41Q15345 812 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 DIXDC1Q155Q3 683 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 FAM47AQ5JRC9 791 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 POTEBQ6S5H4 581 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 HHIPL2Q6UWX4 724 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 ZNF365Q70YC5 407 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 SPRED2Q7Z698 418 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 FBXO33Q7Z6M2 555 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 FAM178BQ8IXR5 827 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 GJD3Q8N144 294 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 VWCEQ96DN2 955 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 TBX21Q9UL17 535 aa6.19□□□□□ -1.42
USP4-209ENST00000475873 ATAD5Q96QE3 1844 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 COL4A6Q14031 1691 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 PI4KAP2A4QPH2 592 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 KBTBD13C9JR72 458 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 GFRA3O60609 400 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 MSCO60682 206 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 CTNND1O60716 968 aaKnown RBP6.18□□□□□ -1.42
USP4-209ENST00000475873 PQBP1O60828 265 aaKnown RBP6.18□□□□□ -1.42
USP4-209ENST00000475873 CNMDO75829 334 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 SLC4A2P04920 1241 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 CSF2RAP15509 400 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 MAPK4P31152 587 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 TMPOP42166 694 aaKnown RBP6.18□□□□□ -1.42
USP4-209ENST00000475873 HERVK_113P62684 666 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 ERVK-9P63128 1117 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 ERVK-24P63145 666 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 SH3D19Q5HYK7 790 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 PLEKHH3Q7Z736 793 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 PI4KAP1Q8N8J0 262 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 GPRC5AQ8NFJ5 357 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 DDX4Q9NQI0 724 aaKnown RBP6.18□□□□□ -1.42
USP4-209ENST00000475873 TMEM39AQ9NV64 488 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 FAM86C1Q9NVL1 165 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 COG5Q9UP83 839 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 TRIM35Q9UPQ4 493 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 WDR87Q6ZQQ6 2873 aa6.18□□□□□ -1.42
USP4-209ENST00000475873 MED19A0JLT2 244 aaPredicted RBP6.17□□□□□ -1.42
USP4-209ENST00000475873 ANKRD18BA2A2Z9 1011 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 TIMP1P01033 207 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 MYCNP04198 464 aaPredicted RBP6.17□□□□□ -1.42
USP4-209ENST00000475873 HOXC6P09630 235 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 IL9P15248 144 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 RGS3P49796 1198 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 JAG1P78504 1218 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 GCKRQ14397 625 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 RAB30Q15771 203 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 SHROOM1Q2M3G4 852 aaPredicted RBP6.17□□□□□ -1.42
USP4-209ENST00000475873 EPHA10Q5JZY3 1008 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 MFSD14CQ5VZR4 134 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 ANKRD33Q7Z3H0 272 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 SLC44A5Q8NCS7 719 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 ARRDC4Q8NCT1 418 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 ZNF280CQ8ND82 737 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 HLA-CQ95604 372 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 EDC3Q96F86 508 aaKnown RBP6.17□□□□□ -1.42
USP4-209ENST00000475873 PUS3Q9BZE2 481 aaKnown RBP6.17□□□□□ -1.42
USP4-209ENST00000475873 SLC28A3Q9HAS3 691 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 MSRAQ9UJ68 235 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 PHF24Q9UPV7 400 aa6.17□□□□□ -1.42
USP4-209ENST00000475873 LAS1LQ9Y4W2 734 aaKnown RBP6.17□□□□□ -1.42
USP4-209ENST00000475873 EP300Q09472 2414 aaPredicted RBP6.17□□□□□ -1.42
USP4-209ENST00000475873 COL4A4P53420 1690 aaPredicted RBP6.17□□□□□ -1.42
USP4-209ENST00000475873 KMT2EQ8IZD2 1858 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 A0A1W2PQ45 241 aaPredicted RBP6.16□□□□□ -1.42
USP4-209ENST00000475873 A0A1W2PQY0 241 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 ELL2O00472 640 aaPredicted RBP6.16□□□□□ -1.42
USP4-209ENST00000475873 DCXO43602 365 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 LPXNO60711 386 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 HOXA7P31268 230 aaPredicted RBP6.16□□□□□ -1.42
USP4-209ENST00000475873 UBE4AQ14139 1066 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 PRAMEF19Q5SWL8 479 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 PPP2R2DQ66LE6 453 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 MFSD5Q6N075 450 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 KSR2Q6VAB6 950 aa6.16□□□□□ -1.42
USP4-209ENST00000475873 G2E3Q7L622 706 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms