RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TBC1D2Q9BYX2 928 aa17.13■□□□□ 0.33
UPF3A-204ENST00000475218 MAGEB6P1A0A0J9YX57 407 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 MTMR2Q13614 643 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 LCORLQ8N3X6 602 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 LRRCC1Q9C099 1032 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 EHD4Q9H223 541 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 PAG1Q9NWQ8 432 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 GABRQQ9UN88 632 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 DOCK3Q8IZD9 2030 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 MYH7P12883 1935 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 FMNL1O95466 1100 aaPredicted RBP17.12■□□□□ 0.33
UPF3A-204ENST00000475218 HLA-DOAP06340 250 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 PRMT2P55345 433 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 PRKCZQ05513 592 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 DCTPP1Q9H773 170 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 PCDHB15Q9Y5E8 787 aa17.12■□□□□ 0.33
UPF3A-204ENST00000475218 SHMT1P34896 483 aa17.11■□□□□ 0.33
UPF3A-204ENST00000475218 ADD2P35612 726 aa17.11■□□□□ 0.33
UPF3A-204ENST00000475218 BACE1P56817 501 aa17.11■□□□□ 0.33
UPF3A-204ENST00000475218 GABPAQ06546 454 aa17.11■□□□□ 0.33
UPF3A-204ENST00000475218 POTEEQ6S8J3 1075 aa17.11■□□□□ 0.33
UPF3A-204ENST00000475218 ANKRD13CQ8N6S4 541 aa17.11■□□□□ 0.33
UPF3A-204ENST00000475218 ASCC2Q9H1I8 757 aaPredicted RBP17.11■□□□□ 0.33
UPF3A-204ENST00000475218 SERPINB13Q9UIV8 391 aa17.11■□□□□ 0.33
UPF3A-204ENST00000475218 MYPNQ86TC9 1320 aa17.11■□□□□ 0.33
UPF3A-204ENST00000475218 MYCP01106 439 aaPredicted RBP17.1■□□□□ 0.33
UPF3A-204ENST00000475218 GH2P01242 217 aa17.1■□□□□ 0.33
UPF3A-204ENST00000475218 SMCR8Q8TEV9 937 aaPredicted RBP17.1■□□□□ 0.33
UPF3A-204ENST00000475218 SDR42E1Q8WUS8 393 aa17.1■□□□□ 0.33
UPF3A-204ENST00000475218 SMIM22K7EJ46 135 aa17.1■□□□□ 0.33
UPF3A-204ENST00000475218 PRKAB2O43741 272 aa17.1■□□□□ 0.33
UPF3A-204ENST00000475218 PEX10O60683 326 aa17.1■□□□□ 0.33
UPF3A-204ENST00000475218 FCGRTP55899 365 aa17.1■□□□□ 0.33
UPF3A-204ENST00000475218 MTFR1Q15390 333 aa17.1■□□□□ 0.33
UPF3A-204ENST00000475218 ARMT1Q9H993 441 aa17.1■□□□□ 0.33
UPF3A-204ENST00000475218 AS3MTQ9HBK9 375 aa17.1■□□□□ 0.33
UPF3A-204ENST00000475218 DCP1AQ9NPI6 582 aaPredicted RBP17.1■□□□□ 0.33
UPF3A-204ENST00000475218 EMILIN3Q9NT22 766 aa17.1■□□□□ 0.33
UPF3A-204ENST00000475218 GINM1Q9NU53 330 aa17.1■□□□□ 0.33
UPF3A-204ENST00000475218 BAZ2AQ9UIF9 1905 aaKnown RBP17.09■□□□□ 0.33
UPF3A-204ENST00000475218 CYP2D6P10635 497 aa17.09■□□□□ 0.33
UPF3A-204ENST00000475218 GUCY1A2P33402 732 aa17.09■□□□□ 0.33
UPF3A-204ENST00000475218 FAM110CQ1W6H9 321 aa17.09■□□□□ 0.33
UPF3A-204ENST00000475218 NBPF11Q86T75 865 aa17.09■□□□□ 0.33
UPF3A-204ENST00000475218 PLXNB2O15031 1838 aa17.08■□□□□ 0.33
UPF3A-204ENST00000475218 HOXA7P31268 230 aaPredicted RBP17.08■□□□□ 0.33
UPF3A-204ENST00000475218 RRP1P56182 461 aaKnown RBP17.08■□□□□ 0.33
UPF3A-204ENST00000475218 TSHZ3Q63HK5 1081 aa17.08■□□□□ 0.33
UPF3A-204ENST00000475218 TTC6Q86TZ1 520 aa17.08■□□□□ 0.33
UPF3A-204ENST00000475218 TRIM34Q9BYJ4 488 aa17.08■□□□□ 0.33
UPF3A-204ENST00000475218 CRNKL1Q9BZJ0 848 aaKnown RBP17.08■□□□□ 0.33
UPF3A-204ENST00000475218 PNMA3Q9UL41 463 aa17.08■□□□□ 0.33
UPF3A-204ENST00000475218 USP17L10C9JJH3 530 aa17.07■□□□□ 0.32
UPF3A-204ENST00000475218 MBD4O95243 580 aa17.07■□□□□ 0.32
UPF3A-204ENST00000475218 GRK4P32298 578 aa17.07■□□□□ 0.32
UPF3A-204ENST00000475218 HOXD10P28358 340 aa17.07■□□□□ 0.32
UPF3A-204ENST00000475218 FLT3LGP49771 235 aa17.07■□□□□ 0.32
UPF3A-204ENST00000475218 SLC44A5Q8NCS7 719 aa17.07■□□□□ 0.32
UPF3A-204ENST00000475218 RAET1EQ8TD07 263 aa17.07■□□□□ 0.32
UPF3A-204ENST00000475218 ACER1Q8TDN7 264 aa17.07■□□□□ 0.32
UPF3A-204ENST00000475218 SHISA4Q96DD7 197 aa17.07■□□□□ 0.32
UPF3A-204ENST00000475218 P2RX7Q99572 595 aaKnown RBP17.07■□□□□ 0.32
UPF3A-204ENST00000475218 TXNRD2Q9NNW7 524 aa17.07■□□□□ 0.32
UPF3A-204ENST00000475218 MCM9Q9NXL9 1143 aa17.07■□□□□ 0.32
UPF3A-204ENST00000475218 C19orf81C9J6K1 198 aa17.06■□□□□ 0.32
UPF3A-204ENST00000475218 GCLCP48506 637 aaPredicted RBP17.06■□□□□ 0.32
UPF3A-204ENST00000475218 CERKLQ49MI3 558 aaPredicted RBP17.06■□□□□ 0.32
UPF3A-204ENST00000475218 ECHDC1Q9NTX5 307 aa17.06■□□□□ 0.32
UPF3A-204ENST00000475218 MORF4L1Q9UBU8 362 aa17.06■□□□□ 0.32
UPF3A-204ENST00000475218 TNPO2O14787 897 aaKnown RBP17.05■□□□□ 0.32
UPF3A-204ENST00000475218 POLR3DP05423 398 aaPredicted RBP17.05■□□□□ 0.32
UPF3A-204ENST00000475218 PABPC4Q13310 644 aaKnown RBP eCLIP17.05■□□□□ 0.321e-6■■■■■ 56.2
UPF3A-204ENST00000475218 UBE3CQ15386 1083 aa17.05■□□□□ 0.32
UPF3A-204ENST00000475218 ABCB5Q2M3G0 1257 aa17.05■□□□□ 0.32
UPF3A-204ENST00000475218 OTUD7AQ8TE49 926 aaPredicted RBP17.05■□□□□ 0.32
UPF3A-204ENST00000475218 C12orf42Q96LP6 360 aa17.05■□□□□ 0.32
UPF3A-204ENST00000475218 TMEM106CQ9BVX2 250 aa17.05■□□□□ 0.32
UPF3A-204ENST00000475218 PUS7LQ9H0K6 701 aaKnown RBP17.05■□□□□ 0.32
UPF3A-204ENST00000475218 CYP2D7A0A087X1C5 515 aa17.05■□□□□ 0.32
UPF3A-204ENST00000475218 ELNP15502 786 aa17.05■□□□□ 0.32
UPF3A-204ENST00000475218 HERVK_113P62684 666 aa17.05■□□□□ 0.32
UPF3A-204ENST00000475218 IRF5Q13568 498 aa17.05■□□□□ 0.32
UPF3A-204ENST00000475218 DYNLL2Q96FJ2 89 aa17.05■□□□□ 0.32
UPF3A-204ENST00000475218 TMOD4Q9NZQ9 345 aa17.05■□□□□ 0.32
UPF3A-204ENST00000475218 PRPF38BQ5VTL8 546 aaKnown RBP17.04■□□□□ 0.32
UPF3A-204ENST00000475218 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.04■□□□□ 0.32
UPF3A-204ENST00000475218 KIAA1683Q9H0B3 1180 aa17.04■□□□□ 0.32
UPF3A-204ENST00000475218 RBPJLQ9UBG7 517 aa17.04■□□□□ 0.32
UPF3A-204ENST00000475218 GJD2Q9UKL4 321 aa17.04■□□□□ 0.32
UPF3A-204ENST00000475218 A0A1W2PRG0 241 aa17.03■□□□□ 0.32
UPF3A-204ENST00000475218 CCL5P13501 91 aa17.03■□□□□ 0.32
UPF3A-204ENST00000475218 SEPT2Q15019 361 aa17.03■□□□□ 0.32
UPF3A-204ENST00000475218 RAB3GAP1Q15042 981 aa17.03■□□□□ 0.32
UPF3A-204ENST00000475218 ZYXQ15942 572 aaKnown RBP17.03■□□□□ 0.32
UPF3A-204ENST00000475218 USP17L2Q6R6M4 530 aa17.03■□□□□ 0.32
UPF3A-204ENST00000475218 SLAIN1Q8ND83 568 aa17.03■□□□□ 0.32
UPF3A-204ENST00000475218 CRBNQ96SW2 442 aa17.03■□□□□ 0.32
UPF3A-204ENST00000475218 ADCY3O60266 1144 aa17.02■□□□□ 0.32
UPF3A-204ENST00000475218 IRX3P78415 501 aaPredicted RBP17.02■□□□□ 0.32
UPF3A-204ENST00000475218 Q3C1V9 767 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms