RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 AS3MTQ9HBK9 375 aa22.88■■□□□ 1.25
CCDC88B-206ENST00000473405 HLA-DOAP06340 250 aa22.87■■□□□ 1.25
CCDC88B-206ENST00000473405 C20orf194Q5TEA3 1177 aa22.87■■□□□ 1.25
CCDC88B-206ENST00000473405 SHISA4Q96DD7 197 aa22.87■■□□□ 1.25
CCDC88B-206ENST00000473405 TRIM34Q9BYJ4 488 aa22.87■■□□□ 1.25
CCDC88B-206ENST00000473405 ASCC2Q9H1I8 757 aaPredicted RBP22.87■■□□□ 1.25
CCDC88B-206ENST00000473405 ZBTB21Q9ULJ3 1066 aa22.87■■□□□ 1.25
CCDC88B-206ENST00000473405 USP5P45974 858 aa22.86■■□□□ 1.25
CCDC88B-206ENST00000473405 BACE1P56817 501 aa22.86■■□□□ 1.25
CCDC88B-206ENST00000473405 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.86■■□□□ 1.25
CCDC88B-206ENST00000473405 TNPO2O14787 897 aaKnown RBP22.85■■□□□ 1.25
CCDC88B-206ENST00000473405 PDE6AP16499 860 aa22.85■■□□□ 1.25
CCDC88B-206ENST00000473405 FLT3LGP49771 235 aa22.85■■□□□ 1.25
CCDC88B-206ENST00000473405 PABPC4Q13310 644 aaKnown RBP eCLIP22.85■■□□□ 1.252e-9■■□□□ 12.8
CCDC88B-206ENST00000473405 TTF1Q15361 905 aaPredicted RBP22.85■■□□□ 1.25
CCDC88B-206ENST00000473405 SLAIN1Q8ND83 568 aa22.85■■□□□ 1.25
CCDC88B-206ENST00000473405 EHD4Q9H223 541 aa22.85■■□□□ 1.25
CCDC88B-206ENST00000473405 GINM1Q9NU53 330 aa22.85■■□□□ 1.25
CCDC88B-206ENST00000473405 RAB11FIP3O75154 756 aa22.84■■□□□ 1.25
CCDC88B-206ENST00000473405 IFIT2P09913 472 aaKnown RBP22.84■■□□□ 1.25
CCDC88B-206ENST00000473405 CCL5P13501 91 aa22.84■■□□□ 1.25
CCDC88B-206ENST00000473405 TATDN1Q6P1N9 297 aa22.84■■□□□ 1.25
CCDC88B-206ENST00000473405 MYH8P13535 1937 aa22.83■■□□□ 1.25
CCDC88B-206ENST00000473405 GOLIM4O00461 696 aa22.83■■□□□ 1.25
CCDC88B-206ENST00000473405 ADCY3O60266 1144 aa22.83■■□□□ 1.25
CCDC88B-206ENST00000473405 GCLCP48506 637 aaPredicted RBP22.83■■□□□ 1.25
CCDC88B-206ENST00000473405 IRF5Q13568 498 aa22.83■■□□□ 1.25
CCDC88B-206ENST00000473405 PDE3AQ14432 1141 aa22.83■■□□□ 1.25
CCDC88B-206ENST00000473405 SLC9C2Q5TAH2 1124 aa22.83■■□□□ 1.25
CCDC88B-206ENST00000473405 DNAJC2Q99543 621 aaKnown RBP22.83■■□□□ 1.25
CCDC88B-206ENST00000473405 SERPINB13Q9UIV8 391 aa22.83■■□□□ 1.25
CCDC88B-206ENST00000473405 MAGEB6P1A0A0J9YX57 407 aa22.82■■□□□ 1.24
CCDC88B-206ENST00000473405 TCRBV5S4A2TA0A5A2 114 aa22.82■■□□□ 1.24
CCDC88B-206ENST00000473405 USP17L10C9JJH3 530 aa22.82■■□□□ 1.24
CCDC88B-206ENST00000473405 GH2P01242 217 aa22.82■■□□□ 1.24
CCDC88B-206ENST00000473405 ELNP15502 786 aa22.82■■□□□ 1.24
CCDC88B-206ENST00000473405 EDC3Q96F86 508 aaKnown RBP22.82■■□□□ 1.24
CCDC88B-206ENST00000473405 CHMP4BQ9H444 224 aaKnown RBP22.82■■□□□ 1.24
CCDC88B-206ENST00000473405 TMOD4Q9NZQ9 345 aa22.82■■□□□ 1.24
CCDC88B-206ENST00000473405 BAZ2AQ9UIF9 1905 aaKnown RBP22.82■■□□□ 1.24
CCDC88B-206ENST00000473405 ZNF532Q9HCE3 1301 aa22.82■■□□□ 1.24
CCDC88B-206ENST00000473405 C19orf81C9J6K1 198 aa22.81■■□□□ 1.24
CCDC88B-206ENST00000473405 HOXA7P31268 230 aaPredicted RBP22.81■■□□□ 1.24
CCDC88B-206ENST00000473405 BCL11AQ9H165 835 aa22.81■■□□□ 1.24
CCDC88B-206ENST00000473405 MORF4L1Q9UBU8 362 aa22.81■■□□□ 1.24
CCDC88B-206ENST00000473405 BIN2Q9UBW5 565 aaPredicted RBP22.81■■□□□ 1.24
CCDC88B-206ENST00000473405 GJB1P08034 283 aa22.8■■□□□ 1.24
CCDC88B-206ENST00000473405 GJA8P48165 433 aa22.8■■□□□ 1.24
CCDC88B-206ENST00000473405 PLCD1P51178 756 aa22.8■■□□□ 1.24
CCDC88B-206ENST00000473405 UBXN2AP68543 259 aa22.8■■□□□ 1.24
CCDC88B-206ENST00000473405 PXYLP1Q8TE99 480 aa22.8■■□□□ 1.24
CCDC88B-206ENST00000473405 COA7Q96BR5 231 aa22.8■■□□□ 1.24
CCDC88B-206ENST00000473405 RNF208Q9H0X6 261 aa22.8■■□□□ 1.24
CCDC88B-206ENST00000473405 UNC93B1Q9H1C4 597 aa22.8■■□□□ 1.24
CCDC88B-206ENST00000473405 INHAP05111 366 aa22.79■■□□□ 1.24
CCDC88B-206ENST00000473405 SHMT1P34896 483 aa22.79■■□□□ 1.24
CCDC88B-206ENST00000473405 IRX3P78415 501 aaPredicted RBP22.79■■□□□ 1.24
CCDC88B-206ENST00000473405 EVX2Q03828 476 aa22.79■■□□□ 1.24
CCDC88B-206ENST00000473405 TTC6Q86TZ1 520 aa22.79■■□□□ 1.24
CCDC88B-206ENST00000473405 EMILIN3Q9NT22 766 aa22.79■■□□□ 1.24
CCDC88B-206ENST00000473405 PAG1Q9NWQ8 432 aa22.79■■□□□ 1.24
CCDC88B-206ENST00000473405 PEX10O60683 326 aa22.78■■□□□ 1.24
CCDC88B-206ENST00000473405 ATP5JP18859 108 aa22.78■■□□□ 1.24
CCDC88B-206ENST00000473405 HERVK_113P62684 666 aa22.78■■□□□ 1.24
CCDC88B-206ENST00000473405 UBE2Q1Q7Z7E8 422 aa22.78■■□□□ 1.24
CCDC88B-206ENST00000473405 LCORLQ8N3X6 602 aa22.78■■□□□ 1.24
CCDC88B-206ENST00000473405 NKX2-3Q8TAU0 364 aa22.78■■□□□ 1.24
CCDC88B-206ENST00000473405 P2RX7Q99572 595 aaKnown RBP22.78■■□□□ 1.24
CCDC88B-206ENST00000473405 CRNKL1Q9BZJ0 848 aaKnown RBP22.78■■□□□ 1.24
CCDC88B-206ENST00000473405 TXNRD2Q9NNW7 524 aa22.78■■□□□ 1.24
CCDC88B-206ENST00000473405 SZT2Q5T011 3432 aa22.78■■□□□ 1.24
CCDC88B-206ENST00000473405 GABPAQ06546 454 aa22.77■■□□□ 1.24
CCDC88B-206ENST00000473405 SLFNL1Q499Z3 407 aa22.77■■□□□ 1.24
CCDC88B-206ENST00000473405 POTEEQ6S8J3 1075 aa22.77■■□□□ 1.24
CCDC88B-206ENST00000473405 BOLA2Q9H3K6 86 aa22.77■■□□□ 1.24
CCDC88B-206ENST00000473405 DNAH12Q6ZR08 3092 aa22.77■■□□□ 1.24
CCDC88B-206ENST00000473405 ABCB5Q2M3G0 1257 aa22.76■■□□□ 1.23
CCDC88B-206ENST00000473405 CERKLQ49MI3 558 aaPredicted RBP22.76■■□□□ 1.23
CCDC88B-206ENST00000473405 USP17L2Q6R6M4 530 aa22.76■■□□□ 1.23
CCDC88B-206ENST00000473405 U2AF1L4Q8WU68 220 aaKnown RBP22.76■■□□□ 1.23
CCDC88B-206ENST00000473405 SDR42E1Q8WUS8 393 aa22.76■■□□□ 1.23
CCDC88B-206ENST00000473405 C12orf42Q96LP6 360 aa22.76■■□□□ 1.23
CCDC88B-206ENST00000473405 HAUS7Q99871 368 aa22.76■■□□□ 1.23
CCDC88B-206ENST00000473405 GJD2Q9UKL4 321 aa22.76■■□□□ 1.23
CCDC88B-206ENST00000473405 GUCY1A2P33402 732 aa22.75■■□□□ 1.23
CCDC88B-206ENST00000473405 ADD2P35612 726 aa22.75■■□□□ 1.23
CCDC88B-206ENST00000473405 RAB3GAP1Q15042 981 aa22.75■■□□□ 1.23
CCDC88B-206ENST00000473405 LRRCC1Q9C099 1032 aa22.75■■□□□ 1.23
CCDC88B-206ENST00000473405 DCP1AQ9NPI6 582 aaPredicted RBP22.75■■□□□ 1.23
CCDC88B-206ENST00000473405 MCM9Q9NXL9 1143 aa22.75■■□□□ 1.23
CCDC88B-206ENST00000473405 TAOK2Q9UL54 1235 aa22.75■■□□□ 1.23
CCDC88B-206ENST00000473405 TRIOBPQ9H2D6 2365 aa22.74■■□□□ 1.23
CCDC88B-206ENST00000473405 SMARCA5O60264 1052 aaPredicted RBP22.74■■□□□ 1.23
CCDC88B-206ENST00000473405 CHGBP05060 677 aa22.74■■□□□ 1.23
CCDC88B-206ENST00000473405 POLR3DP05423 398 aaPredicted RBP22.74■■□□□ 1.23
CCDC88B-206ENST00000473405 ZYXQ15942 572 aaKnown RBP22.74■■□□□ 1.23
CCDC88B-206ENST00000473405 ACER1Q8TDN7 264 aa22.74■■□□□ 1.23
CCDC88B-206ENST00000473405 GCC1Q96CN9 775 aa22.74■■□□□ 1.23
CCDC88B-206ENST00000473405 FEZ1Q99689 392 aa22.74■■□□□ 1.23
CCDC88B-206ENST00000473405 KIAA1683Q9H0B3 1180 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms