RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 HLA-DOAP06340 250 aa20.26■□□□□ 0.83
USP40-212ENST00000473191 ASNSP08243 561 aa20.26■□□□□ 0.83
USP40-212ENST00000473191 LCORLQ8N3X6 602 aa20.26■□□□□ 0.83
USP40-212ENST00000473191 RAET1EQ8TD07 263 aa20.26■□□□□ 0.83
USP40-212ENST00000473191 SDR42E1Q8WUS8 393 aa20.26■□□□□ 0.83
USP40-212ENST00000473191 WDR18Q9BV38 432 aa20.26■□□□□ 0.83
USP40-212ENST00000473191 TMEM106CQ9BVX2 250 aa20.26■□□□□ 0.83
USP40-212ENST00000473191 ASCC2Q9H1I8 757 aaPredicted RBP20.26■□□□□ 0.83
USP40-212ENST00000473191 NAV1Q8NEY1 1877 aa20.26■□□□□ 0.83
USP40-212ENST00000473191 MAGEB6P1A0A0J9YX57 407 aa20.25■□□□□ 0.83
USP40-212ENST00000473191 SMIM22K7EJ46 135 aa20.25■□□□□ 0.83
USP40-212ENST00000473191 GH2P01242 217 aa20.25■□□□□ 0.83
USP40-212ENST00000473191 GRK4P32298 578 aa20.25■□□□□ 0.83
USP40-212ENST00000473191 PRMT2P55345 433 aa20.25■□□□□ 0.83
USP40-212ENST00000473191 BACE1P56817 501 aa20.25■□□□□ 0.83
USP40-212ENST00000473191 TTF1Q15361 905 aaPredicted RBP20.25■□□□□ 0.83
USP40-212ENST00000473191 TATDN1Q6P1N9 297 aa20.25■□□□□ 0.83
USP40-212ENST00000473191 TRIM34Q9BYJ4 488 aa20.25■□□□□ 0.83
USP40-212ENST00000473191 AS3MTQ9HBK9 375 aa20.25■□□□□ 0.83
USP40-212ENST00000473191 KIAA0100Q14667 2235 aaKnown RBP20.25■□□□□ 0.83
USP40-212ENST00000473191 HOXD10P28358 340 aa20.24■□□□□ 0.83
USP40-212ENST00000473191 FLT3LGP49771 235 aa20.24■□□□□ 0.83
USP40-212ENST00000473191 PRPF38BQ5VTL8 546 aaKnown RBP20.24■□□□□ 0.83
USP40-212ENST00000473191 POTEEQ6S8J3 1075 aa20.24■□□□□ 0.83
USP40-212ENST00000473191 SHISA4Q96DD7 197 aa20.24■□□□□ 0.83
USP40-212ENST00000473191 TBC1D2Q9BYX2 928 aa20.24■□□□□ 0.83
USP40-212ENST00000473191 PAG1Q9NWQ8 432 aa20.24■□□□□ 0.83
USP40-212ENST00000473191 TNPO2O14787 897 aaKnown RBP20.23■□□□□ 0.83
USP40-212ENST00000473191 PRKAB2O43741 272 aa20.23■□□□□ 0.83
USP40-212ENST00000473191 CYP2D6P10635 497 aa20.23■□□□□ 0.83
USP40-212ENST00000473191 ELNP15502 786 aa20.23■□□□□ 0.83
USP40-212ENST00000473191 ATP5JP18859 108 aa20.23■□□□□ 0.83
USP40-212ENST00000473191 SHMT1P34896 483 aa20.23■□□□□ 0.83
USP40-212ENST00000473191 DOCK3Q8IZD9 2030 aa20.23■□□□□ 0.83
USP40-212ENST00000473191 P2RX7Q99572 595 aaKnown RBP20.23■□□□□ 0.83
USP40-212ENST00000473191 ARMT1Q9H993 441 aa20.23■□□□□ 0.83
USP40-212ENST00000473191 EMILIN3Q9NT22 766 aa20.23■□□□□ 0.83
USP40-212ENST00000473191 SERPINB13Q9UIV8 391 aa20.23■□□□□ 0.83
USP40-212ENST00000473191 ZYXQ15942 572 aaKnown RBP20.22■□□□□ 0.83
USP40-212ENST00000473191 FAM110CQ1W6H9 321 aa20.22■□□□□ 0.83
USP40-212ENST00000473191 HAUS7Q99871 368 aa20.22■□□□□ 0.83
USP40-212ENST00000473191 LRRCC1Q9C099 1032 aa20.22■□□□□ 0.83
USP40-212ENST00000473191 EHD4Q9H223 541 aa20.22■□□□□ 0.83
USP40-212ENST00000473191 TXNRD2Q9NNW7 524 aa20.22■□□□□ 0.83
USP40-212ENST00000473191 PNMA3Q9UL41 463 aa20.22■□□□□ 0.83
USP40-212ENST00000473191 PDE4DIPQ5VU43 2346 aa20.21■□□□□ 0.83
USP40-212ENST00000473191 USP17L10C9JJH3 530 aa20.21■□□□□ 0.83
USP40-212ENST00000473191 GUCY1A2P33402 732 aa20.21■□□□□ 0.83
USP40-212ENST00000473191 ADD2P35612 726 aa20.21■□□□□ 0.83
USP40-212ENST00000473191 GABPAQ06546 454 aa20.21■□□□□ 0.83
USP40-212ENST00000473191 TSHZ3Q63HK5 1081 aa20.21■□□□□ 0.83
USP40-212ENST00000473191 SLC44A5Q8NCS7 719 aa20.21■□□□□ 0.83
USP40-212ENST00000473191 ACER1Q8TDN7 264 aa20.21■□□□□ 0.83
USP40-212ENST00000473191 CHMP4BQ9H444 224 aaKnown RBP20.21■□□□□ 0.83
USP40-212ENST00000473191 DCP1AQ9NPI6 582 aaPredicted RBP20.21■□□□□ 0.83
USP40-212ENST00000473191 ADCY3O60266 1144 aa20.2■□□□□ 0.82
USP40-212ENST00000473191 POLR3DP05423 398 aaPredicted RBP20.2■□□□□ 0.82
USP40-212ENST00000473191 CCL5P13501 91 aa20.2■□□□□ 0.82
USP40-212ENST00000473191 RAB3GAP1Q15042 981 aa20.2■□□□□ 0.82
USP40-212ENST00000473191 CERKLQ49MI3 558 aaPredicted RBP20.2■□□□□ 0.82
USP40-212ENST00000473191 CERS3Q8IU89 383 aa20.2■□□□□ 0.82
USP40-212ENST00000473191 UNC93B1Q9H1C4 597 aa20.2■□□□□ 0.82
USP40-212ENST00000473191 MCM9Q9NXL9 1143 aa20.2■□□□□ 0.82
USP40-212ENST00000473191 TMOD4Q9NZQ9 345 aa20.2■□□□□ 0.82
USP40-212ENST00000473191 TAOK2Q9UL54 1235 aa20.2■□□□□ 0.82
USP40-212ENST00000473191 PCDHB15Q9Y5E8 787 aa20.2■□□□□ 0.82
USP40-212ENST00000473191 PLXNB2O15031 1838 aa20.2■□□□□ 0.82
USP40-212ENST00000473191 CYP2D7A0A087X1C5 515 aa20.19■□□□□ 0.82
USP40-212ENST00000473191 C19orf81C9J6K1 198 aa20.19■□□□□ 0.82
USP40-212ENST00000473191 MBD4O95243 580 aa20.19■□□□□ 0.82
USP40-212ENST00000473191 HOXA7P31268 230 aaPredicted RBP20.19■□□□□ 0.82
USP40-212ENST00000473191 Q3C1V9 767 aa20.19■□□□□ 0.82
USP40-212ENST00000473191 TTC6Q86TZ1 520 aa20.19■□□□□ 0.82
USP40-212ENST00000473191 DYNLL2Q96FJ2 89 aa20.19■□□□□ 0.82
USP40-212ENST00000473191 CRNKL1Q9BZJ0 848 aaKnown RBP20.19■□□□□ 0.82
USP40-212ENST00000473191 BIN2Q9UBW5 565 aaPredicted RBP20.19■□□□□ 0.82
USP40-212ENST00000473191 GCLCP48506 637 aaPredicted RBP20.18■□□□□ 0.82
USP40-212ENST00000473191 HERVK_113P62684 666 aa20.18■□□□□ 0.82
USP40-212ENST00000473191 IRX3P78415 501 aaPredicted RBP20.18■□□□□ 0.82
USP40-212ENST00000473191 PABPC4Q13310 644 aaKnown RBP eCLIP20.18■□□□□ 0.82
USP40-212ENST00000473191 ABCB5Q2M3G0 1257 aa20.18■□□□□ 0.82
USP40-212ENST00000473191 TMED8Q6PL24 325 aaPredicted RBP20.18■□□□□ 0.82
USP40-212ENST00000473191 SLAIN1Q8ND83 568 aa20.18■□□□□ 0.82
USP40-212ENST00000473191 RNF208Q9H0X6 261 aa20.18■□□□□ 0.82
USP40-212ENST00000473191 DCTPP1Q9H773 170 aa20.18■□□□□ 0.82
USP40-212ENST00000473191 GJD2Q9UKL4 321 aa20.18■□□□□ 0.82
USP40-212ENST00000473191 BAZ2AQ9UIF9 1905 aaKnown RBP20.17■□□□□ 0.82
USP40-212ENST00000473191 INHAP05111 366 aa20.17■□□□□ 0.82
USP40-212ENST00000473191 SEPT2Q15019 361 aa20.17■□□□□ 0.82
USP40-212ENST00000473191 PUS7LQ9H0K6 701 aaKnown RBP20.17■□□□□ 0.82
USP40-212ENST00000473191 GINM1Q9NU53 330 aa20.17■□□□□ 0.82
USP40-212ENST00000473191 RBPJLQ9UBG7 517 aa20.17■□□□□ 0.82
USP40-212ENST00000473191 MORF4L1Q9UBU8 362 aa20.17■□□□□ 0.82
USP40-212ENST00000473191 MYH7P12883 1935 aa20.17■□□□□ 0.82
USP40-212ENST00000473191 TRIM32Q13049 653 aa20.16■□□□□ 0.82
USP40-212ENST00000473191 IRF5Q13568 498 aa20.16■□□□□ 0.82
USP40-212ENST00000473191 USP17L2Q6R6M4 530 aa20.16■□□□□ 0.82
USP40-212ENST00000473191 CLEC10AQ8IUN9 316 aa20.16■□□□□ 0.82
USP40-212ENST00000473191 COA7Q96BR5 231 aa20.16■□□□□ 0.82
USP40-212ENST00000473191 A0A1W2PRG0 241 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms