RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 PPP4R3BQ5MIZ7 849 aa15□□□□□ -0.01
VPS13D-205ENST00000473099 CLEC17AQ6ZS10 378 aa15□□□□□ -0.01
VPS13D-205ENST00000473099 ENAHQ8N8S7 591 aaPredicted RBP15□□□□□ -0.01
VPS13D-205ENST00000473099 DDX4Q9NQI0 724 aaKnown RBP15□□□□□ -0.01
VPS13D-205ENST00000473099 GPHNQ9NQX3 736 aaPredicted RBP15□□□□□ -0.01
VPS13D-205ENST00000473099 SERPINB13Q9UIV8 391 aa15□□□□□ -0.01
VPS13D-205ENST00000473099 PLIN4Q96Q06 1357 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 ATAD5Q96QE3 1844 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 GOLGA8AA7E2F4 631 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 STX6O43752 255 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 DDAH1O94760 285 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 TSPY3P0CV98 308 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 TSPY8P0CW00 308 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 YBX3P16989 372 aaKnown RBP eCLIP14.99□□□□□ -0.01
VPS13D-205ENST00000473099 CCT2P78371 535 aaKnown RBP14.99□□□□□ -0.01
VPS13D-205ENST00000473099 TFAP4Q01664 338 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 GABPAQ06546 454 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 CATIPQ7Z7H3 387 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 DGKHQ86XP1 1220 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 ZNF654Q8IZM8 581 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 FAM184AQ8NB25 1140 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 NSUN7Q8NE18 718 aaKnown RBP14.99□□□□□ -0.01
VPS13D-205ENST00000473099 ANKS1AQ92625 1134 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 TNPO1Q92973 898 aaKnown RBP14.99□□□□□ -0.01
VPS13D-205ENST00000473099 DYNLL2Q96FJ2 89 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 PI4KBQ9UBF8 816 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 HPS5Q9UPZ3 1129 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 ATP6V1DQ9Y5K8 247 aa14.99□□□□□ -0.01
VPS13D-205ENST00000473099 POLR2AP24928 1970 aaKnown RBP14.98□□□□□ -0.01
VPS13D-205ENST00000473099 SMIM22K7EJ46 135 aa14.98□□□□□ -0.01
VPS13D-205ENST00000473099 RASA1P20936 1047 aa14.98□□□□□ -0.01
VPS13D-205ENST00000473099 SYT1P21579 422 aa14.98□□□□□ -0.01
VPS13D-205ENST00000473099 ZNF280AP59817 542 aaPredicted RBP14.98□□□□□ -0.01
VPS13D-205ENST00000473099 SPDYE2Q495Y8 402 aa14.98□□□□□ -0.01
VPS13D-205ENST00000473099 LARP1BQ659C4 914 aaKnown RBP14.98□□□□□ -0.01
VPS13D-205ENST00000473099 ARHGAP27Q6ZUM4 889 aa14.98□□□□□ -0.01
VPS13D-205ENST00000473099 MICU3Q86XE3 530 aa14.98□□□□□ -0.01
VPS13D-205ENST00000473099 FOXP4Q8IVH2 680 aaPredicted RBP14.98□□□□□ -0.01
VPS13D-205ENST00000473099 NEDD1Q8NHV4 660 aa14.98□□□□□ -0.01
VPS13D-205ENST00000473099 NKX2-3Q8TAU0 364 aa14.98□□□□□ -0.01
VPS13D-205ENST00000473099 PRMT6Q96LA8 375 aaPredicted RBP14.98□□□□□ -0.01
VPS13D-205ENST00000473099 CCDC17Q96LX7 622 aa14.98□□□□□ -0.01
VPS13D-205ENST00000473099 MAP3K14Q99558 947 aa14.98□□□□□ -0.01
VPS13D-205ENST00000473099 ZKSCAN3Q9BRR0 538 aa14.98□□□□□ -0.01
VPS13D-205ENST00000473099 TDRD3Q9H7E2 651 aaKnown RBP14.98□□□□□ -0.01
VPS13D-205ENST00000473099 RBM28Q9NW13 759 aaKnown RBP14.98□□□□□ -0.01
VPS13D-205ENST00000473099 ZBTB12Q9Y330 459 aaPredicted RBP14.98□□□□□ -0.01
VPS13D-205ENST00000473099 STK36Q9NRP7 1315 aa14.97□□□□□ -0.01
VPS13D-205ENST00000473099 PTPDC1A2A3K4 754 aa14.97□□□□□ -0.01
VPS13D-205ENST00000473099 DDX11L8A8MPP1 907 aa14.97□□□□□ -0.01
VPS13D-205ENST00000473099 GOLGA6L22H0YM25 854 aa14.97□□□□□ -0.01
VPS13D-205ENST00000473099 ZSCAN22P10073 491 aaPredicted RBP14.97□□□□□ -0.01
VPS13D-205ENST00000473099 NFIAQ12857 509 aa14.97□□□□□ -0.01
VPS13D-205ENST00000473099 NFKBIBQ15653 356 aa14.97□□□□□ -0.01
VPS13D-205ENST00000473099 RTN1Q16799 776 aa14.97□□□□□ -0.01
VPS13D-205ENST00000473099 SLC4A8Q2Y0W8 1093 aa14.97□□□□□ -0.01
VPS13D-205ENST00000473099 ZBED3Q96IU2 234 aaPredicted RBP14.97□□□□□ -0.01
VPS13D-205ENST00000473099 TRIM34Q9BYJ4 488 aa14.97□□□□□ -0.01
VPS13D-205ENST00000473099 FAM198AQ9UFP1 575 aa14.97□□□□□ -0.01
VPS13D-205ENST00000473099 TNNI2P48788 182 aa14.96□□□□□ -0.01
VPS13D-205ENST00000473099 EVX2Q03828 476 aa14.96□□□□□ -0.01
VPS13D-205ENST00000473099 FAM47AQ5JRC9 791 aa14.96□□□□□ -0.01
VPS13D-205ENST00000473099 FAM83AQ86UY5 434 aa14.96□□□□□ -0.01
VPS13D-205ENST00000473099 ZSCAN29Q8IWY8 852 aaPredicted RBP14.96□□□□□ -0.01
VPS13D-205ENST00000473099 CRACR2BQ8N4Y2 399 aaPredicted RBP14.96□□□□□ -0.01
VPS13D-205ENST00000473099 FAM151AQ8WW52 585 aa14.96□□□□□ -0.01
VPS13D-205ENST00000473099 NCOA5Q9HCD5 579 aaKnown RBP14.96□□□□□ -0.01
VPS13D-205ENST00000473099 MYOZ2Q9NPC6 264 aa14.96□□□□□ -0.01
VPS13D-205ENST00000473099 ZNF70Q9UC06 446 aaPredicted RBP14.96□□□□□ -0.01
VPS13D-205ENST00000473099 BAZ2BQ9UIF8 2168 aaKnown RBP14.95□□□□□ -0.02
VPS13D-205ENST00000473099 CTDNEP1O95476 244 aa14.95□□□□□ -0.02
VPS13D-205ENST00000473099 IFNAR1P17181 557 aa14.95□□□□□ -0.02
VPS13D-205ENST00000473099 KIF5BP33176 963 aa14.95□□□□□ -0.02
VPS13D-205ENST00000473099 TNFAIP1Q13829 316 aa14.95□□□□□ -0.02
VPS13D-205ENST00000473099 METTL16Q86W50 562 aaKnown RBP14.95□□□□□ -0.02
VPS13D-205ENST00000473099 FANCBQ8NB91 859 aa14.95□□□□□ -0.02
VPS13D-205ENST00000473099 SLC44A5Q8NCS7 719 aa14.95□□□□□ -0.02
VPS13D-205ENST00000473099 WASF1Q92558 559 aa14.95□□□□□ -0.02
VPS13D-205ENST00000473099 KAT14Q9H8E8 782 aa14.95□□□□□ -0.02
VPS13D-205ENST00000473099 SENP2Q9HC62 589 aa14.95□□□□□ -0.02
VPS13D-205ENST00000473099 HERC5Q9UII4 1024 aaKnown RBP14.95□□□□□ -0.02
VPS13D-205ENST00000473099 ZDHHC9Q9Y397 364 aa14.95□□□□□ -0.02
VPS13D-205ENST00000473099 PCDHAC2Q9Y5I4 1007 aa14.95□□□□□ -0.02
VPS13D-205ENST00000473099 H3BQV1 296 aa14.94□□□□□ -0.02
VPS13D-205ENST00000473099 JAK2O60674 1132 aa14.94□□□□□ -0.02
VPS13D-205ENST00000473099 MCM4P33991 863 aa14.94□□□□□ -0.02
VPS13D-205ENST00000473099 PRELPP51888 382 aa14.94□□□□□ -0.02
VPS13D-205ENST00000473099 TCP10Q12799 353 aa14.94□□□□□ -0.02
VPS13D-205ENST00000473099 PKP1Q13835 747 aa14.94□□□□□ -0.02
VPS13D-205ENST00000473099 IFFO2Q5TF58 517 aa14.94□□□□□ -0.02
VPS13D-205ENST00000473099 TRIM22Q8IYM9 498 aa14.94□□□□□ -0.02
VPS13D-205ENST00000473099 GPC2Q8N158 579 aa14.94□□□□□ -0.02
VPS13D-205ENST00000473099 CTCFLQ8NI51 663 aaPredicted RBP14.94□□□□□ -0.02
VPS13D-205ENST00000473099 ORC3Q9UBD5 711 aaPredicted RBP14.94□□□□□ -0.02
VPS13D-205ENST00000473099 MTMR6Q9Y217 621 aa14.94□□□□□ -0.02
VPS13D-205ENST00000473099 VPS37CA5D8V6 355 aaPredicted RBP14.93□□□□□ -0.02
VPS13D-205ENST00000473099 H7C1D1 291 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 WNT10BO00744 389 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 F13A1P00488 732 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 TOP1P11387 765 aaKnown RBP14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms