RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 RNF208Q9H0X6 261 aa19.09■□□□□ 0.65
CCDC88B-205ENST00000472524 AGTPBP1Q9UPW5 1226 aa19.09■□□□□ 0.65
CCDC88B-205ENST00000472524 SLC45A1Q9Y2W3 748 aa19.09■□□□□ 0.65
CCDC88B-205ENST00000472524 BAZ2AQ9UIF9 1905 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-205ENST00000472524 GDF11O95390 407 aa19.08■□□□□ 0.64
CCDC88B-205ENST00000472524 TREML2Q5T2D2 321 aa19.08■□□□□ 0.64
CCDC88B-205ENST00000472524 UBE2Q1Q7Z7E8 422 aa19.08■□□□□ 0.64
CCDC88B-205ENST00000472524 FOXP4Q8IVH2 680 aaPredicted RBP19.08■□□□□ 0.64
CCDC88B-205ENST00000472524 SLAIN1Q8ND83 568 aa19.08■□□□□ 0.64
CCDC88B-205ENST00000472524 NKX2-3Q8TAU0 364 aa19.08■□□□□ 0.64
CCDC88B-205ENST00000472524 SMCR8Q8TEV9 937 aaPredicted RBP19.08■□□□□ 0.64
CCDC88B-205ENST00000472524 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.08■□□□□ 0.64
CCDC88B-205ENST00000472524 EDC3Q96F86 508 aaKnown RBP19.08■□□□□ 0.64
CCDC88B-205ENST00000472524 TBC1D2Q9BYX2 928 aa19.08■□□□□ 0.64
CCDC88B-205ENST00000472524 UNC93B1Q9H1C4 597 aa19.08■□□□□ 0.64
CCDC88B-205ENST00000472524 AS3MTQ9HBK9 375 aa19.08■□□□□ 0.64
CCDC88B-205ENST00000472524 ELNP15502 786 aa19.07■□□□□ 0.64
CCDC88B-205ENST00000472524 PDE6AP16499 860 aa19.07■□□□□ 0.64
CCDC88B-205ENST00000472524 FLT3LGP49771 235 aa19.07■□□□□ 0.64
CCDC88B-205ENST00000472524 HMGCS2P54868 508 aa19.07■□□□□ 0.64
CCDC88B-205ENST00000472524 UBXN2AP68543 259 aa19.07■□□□□ 0.64
CCDC88B-205ENST00000472524 SHROOM1Q2M3G4 852 aaPredicted RBP19.07■□□□□ 0.64
CCDC88B-205ENST00000472524 SLC9C2Q5TAH2 1124 aa19.07■□□□□ 0.64
CCDC88B-205ENST00000472524 ANKRD13CQ8N6S4 541 aa19.07■□□□□ 0.64
CCDC88B-205ENST00000472524 DPF3Q92784 378 aa19.07■□□□□ 0.64
CCDC88B-205ENST00000472524 BOLA2Q9H3K6 86 aa19.07■□□□□ 0.64
CCDC88B-205ENST00000472524 MAGEB6P1A0A0J9YX57 407 aa19.06■□□□□ 0.64
CCDC88B-205ENST00000472524 TNPO2O14787 897 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-205ENST00000472524 SMARCA5O60264 1052 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-205ENST00000472524 ADCY3O60266 1144 aa19.06■□□□□ 0.64
CCDC88B-205ENST00000472524 ASNSP08243 561 aa19.06■□□□□ 0.64
CCDC88B-205ENST00000472524 JAG1P78504 1218 aa19.06■□□□□ 0.64
CCDC88B-205ENST00000472524 TMED8Q6PL24 325 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-205ENST00000472524 METTL16Q86W50 562 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-205ENST00000472524 PROCA1Q8NCQ7 364 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-205ENST00000472524 RIOK1Q9BRS2 568 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-205ENST00000472524 LRRCC1Q9C099 1032 aa19.06■□□□□ 0.64
CCDC88B-205ENST00000472524 PNMA3Q9UL41 463 aa19.06■□□□□ 0.64
CCDC88B-205ENST00000472524 ZNF532Q9HCE3 1301 aa19.05■□□□□ 0.64
CCDC88B-205ENST00000472524 MTMR2Q13614 643 aa19.05■□□□□ 0.64
CCDC88B-205ENST00000472524 U2AF1L4Q8WU68 220 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-205ENST00000472524 PAG1Q9NWQ8 432 aa19.05■□□□□ 0.64
CCDC88B-205ENST00000472524 ZBTB21Q9ULJ3 1066 aa19.05■□□□□ 0.64
CCDC88B-205ENST00000472524 INHAP05111 366 aa19.04■□□□□ 0.64
CCDC88B-205ENST00000472524 CHRDL2Q6WN34 429 aa19.04■□□□□ 0.64
CCDC88B-205ENST00000472524 TCRBV5S4A2TA0A5A2 114 aa19.03■□□□□ 0.64
CCDC88B-205ENST00000472524 ATP5JP18859 108 aa19.03■□□□□ 0.64
CCDC88B-205ENST00000472524 PABPC4Q13310 644 aaKnown RBP eCLIP19.03■□□□□ 0.642e-9■■□□□ 12.8
CCDC88B-205ENST00000472524 IRF5Q13568 498 aa19.03■□□□□ 0.64
CCDC88B-205ENST00000472524 WDR18Q9BV38 432 aa19.03■□□□□ 0.64
CCDC88B-205ENST00000472524 CRNKL1Q9BZJ0 848 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-205ENST00000472524 SERPINB13Q9UIV8 391 aa19.03■□□□□ 0.64
CCDC88B-205ENST00000472524 FARP2O94887 1054 aaPredicted RBP19.02■□□□□ 0.64
CCDC88B-205ENST00000472524 GH2P01242 217 aa19.02■□□□□ 0.64
CCDC88B-205ENST00000472524 BACE1P56817 501 aa19.02■□□□□ 0.64
CCDC88B-205ENST00000472524 SLFNL1Q499Z3 407 aa19.02■□□□□ 0.64
CCDC88B-205ENST00000472524 SH3D19Q5HYK7 790 aa19.02■□□□□ 0.64
CCDC88B-205ENST00000472524 TTC6Q86TZ1 520 aa19.02■□□□□ 0.64
CCDC88B-205ENST00000472524 LCORLQ8N3X6 602 aa19.02■□□□□ 0.64
CCDC88B-205ENST00000472524 PXYLP1Q8TE99 480 aa19.02■□□□□ 0.64
CCDC88B-205ENST00000472524 HAUS7Q99871 368 aa19.02■□□□□ 0.64
CCDC88B-205ENST00000472524 GINM1Q9NU53 330 aa19.02■□□□□ 0.64
CCDC88B-205ENST00000472524 TMOD4Q9NZQ9 345 aa19.02■□□□□ 0.64
CCDC88B-205ENST00000472524 TAOK2Q9UL54 1235 aa19.02■□□□□ 0.64
CCDC88B-205ENST00000472524 RANBP2P49792 3224 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-205ENST00000472524 SGPL1O95470 568 aa19.01■□□□□ 0.63
CCDC88B-205ENST00000472524 POLR3DP05423 398 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-205ENST00000472524 PLCD1P51178 756 aa19.01■□□□□ 0.63
CCDC88B-205ENST00000472524 FAM110CQ1W6H9 321 aa19.01■□□□□ 0.63
CCDC88B-205ENST00000472524 SDR42E1Q8WUS8 393 aa19.01■□□□□ 0.63
CCDC88B-205ENST00000472524 HTATIP2Q9BUP3 242 aa19.01■□□□□ 0.63
CCDC88B-205ENST00000472524 ASCC2Q9H1I8 757 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-205ENST00000472524 EHD4Q9H223 541 aa19.01■□□□□ 0.63
CCDC88B-205ENST00000472524 RBM27Q9P2N5 1060 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-205ENST00000472524 USP17L10C9JJH3 530 aa19■□□□□ 0.63
CCDC88B-205ENST00000472524 ADD2P35612 726 aa19■□□□□ 0.63
CCDC88B-205ENST00000472524 COA7Q96BR5 231 aa19■□□□□ 0.63
CCDC88B-205ENST00000472524 YTHDC1Q96MU7 727 aaKnown RBP19■□□□□ 0.63
CCDC88B-205ENST00000472524 DEFB118Q96PH6 123 aa19■□□□□ 0.63
CCDC88B-205ENST00000472524 DDX24Q9GZR7 859 aaKnown RBP eCLIP19■□□□□ 0.63
CCDC88B-205ENST00000472524 ARMT1Q9H993 441 aa19■□□□□ 0.63
CCDC88B-205ENST00000472524 MCM9Q9NXL9 1143 aa19■□□□□ 0.63
CCDC88B-205ENST00000472524 RRP1P56182 461 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-205ENST00000472524 IRX3P78415 501 aaPredicted RBP18.99■□□□□ 0.63
CCDC88B-205ENST00000472524 CERKLQ49MI3 558 aaPredicted RBP18.99■□□□□ 0.63
CCDC88B-205ENST00000472524 TATDN1Q6P1N9 297 aa18.99■□□□□ 0.63
CCDC88B-205ENST00000472524 DCTPP1Q9H773 170 aa18.99■□□□□ 0.63
CCDC88B-205ENST00000472524 PAK6Q9NQU5 681 aaPredicted RBP18.99■□□□□ 0.63
CCDC88B-205ENST00000472524 C19orf81C9J6K1 198 aa18.98■□□□□ 0.63
CCDC88B-205ENST00000472524 MBD4O95243 580 aa18.98■□□□□ 0.63
CCDC88B-205ENST00000472524 TFRCP02786 760 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-205ENST00000472524 CHGBP05060 677 aa18.98■□□□□ 0.63
CCDC88B-205ENST00000472524 GCLCP48506 637 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-205ENST00000472524 EVX2Q03828 476 aa18.98■□□□□ 0.63
CCDC88B-205ENST00000472524 RAB3GAP1Q15042 981 aa18.98■□□□□ 0.63
CCDC88B-205ENST00000472524 ZYXQ15942 572 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-205ENST00000472524 ABCB5Q2M3G0 1257 aa18.98■□□□□ 0.63
CCDC88B-205ENST00000472524 FEZ1Q99689 392 aa18.98■□□□□ 0.63
CCDC88B-205ENST00000472524 CYP2D6P10635 497 aa18.97■□□□□ 0.63
CCDC88B-205ENST00000472524 SHMT1P34896 483 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms