RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 CPA4Q9UI42 421 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 ATP6V0A2Q9Y487 856 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 FRYLO94915 3013 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 GAKO14976 1311 aa7.11□□□□□ -1.27
HMGB1-207ENST00000468384 CENPJQ9HC77 1338 aaPredicted RBP7.11□□□□□ -1.27
HMGB1-207ENST00000468384 A0A0G2JMZ2 1700 aa7.11□□□□□ -1.27
HMGB1-207ENST00000468384 DPYSL4O14531 572 aa7.11□□□□□ -1.27
HMGB1-207ENST00000468384 EPHB4P54760 987 aa7.11□□□□□ -1.27
HMGB1-207ENST00000468384 FCGRTP55899 365 aa7.11□□□□□ -1.27
HMGB1-207ENST00000468384 CCDC129Q6ZRS4 1044 aa7.11□□□□□ -1.27
HMGB1-207ENST00000468384 CRAMP1Q96RY5 1269 aa7.11□□□□□ -1.27
HMGB1-207ENST00000468384 SPSB2Q99619 263 aa7.11□□□□□ -1.27
HMGB1-207ENST00000468384 MYOZ2Q9NPC6 264 aa7.11□□□□□ -1.27
HMGB1-207ENST00000468384 ITPR1Q14643 2758 aa7.1□□□□□ -1.27
HMGB1-207ENST00000468384 HSP90AB1P08238 724 aaKnown RBP7.1□□□□□ -1.27
HMGB1-207ENST00000468384 GTF2A2P52657 109 aa7.1□□□□□ -1.27
HMGB1-207ENST00000468384 IRF5Q13568 498 aa7.1□□□□□ -1.27
HMGB1-207ENST00000468384 NBPF9Q3BBW0 867 aa7.1□□□□□ -1.27
HMGB1-207ENST00000468384 HSP90AB2PQ58FF8 381 aa7.1□□□□□ -1.27
HMGB1-207ENST00000468384 LRSAM1Q6UWE0 723 aa7.1□□□□□ -1.27
HMGB1-207ENST00000468384 KIAA2013Q8IYS2 634 aa7.1□□□□□ -1.27
HMGB1-207ENST00000468384 OPTNQ96CV9 577 aa7.1□□□□□ -1.27
HMGB1-207ENST00000468384 DBNDD1Q9H9R9 158 aa7.1□□□□□ -1.27
HMGB1-207ENST00000468384 ZCCHC17Q9NP64 241 aaKnown RBP7.1□□□□□ -1.27
HMGB1-207ENST00000468384 ZNF330Q9Y3S2 320 aaPredicted RBP7.1□□□□□ -1.27
HMGB1-207ENST00000468384 COL4A3Q01955 1670 aa7.09□□□□□ -1.27
HMGB1-207ENST00000468384 IGSF10Q6WRI0 2623 aa7.09□□□□□ -1.27
HMGB1-207ENST00000468384 FAM177BA6PVY3 158 aa7.09□□□□□ -1.27
HMGB1-207ENST00000468384 GPR37O15354 613 aa7.09□□□□□ -1.27
HMGB1-207ENST00000468384 PPP1R12BO60237 982 aaPredicted RBP7.09□□□□□ -1.27
HMGB1-207ENST00000468384 NR1I2O75469 434 aa7.09□□□□□ -1.27
HMGB1-207ENST00000468384 VIL1P09327 827 aaKnown RBP7.09□□□□□ -1.27
HMGB1-207ENST00000468384 RRS1Q15050 365 aaKnown RBP7.09□□□□□ -1.27
HMGB1-207ENST00000468384 PDIA6Q15084 440 aa7.09□□□□□ -1.27
HMGB1-207ENST00000468384 KIAA0319Q5VV43 1072 aa7.09□□□□□ -1.27
HMGB1-207ENST00000468384 FRMD5Q7Z6J6 570 aa7.09□□□□□ -1.27
HMGB1-207ENST00000468384 SCUBE3Q8IX30 993 aa7.09□□□□□ -1.27
HMGB1-207ENST00000468384 RBM17Q96I25 401 aaKnown RBP7.09□□□□□ -1.27
HMGB1-207ENST00000468384 KRTAP4-11Q9BYQ6 195 aa7.09□□□□□ -1.27
HMGB1-207ENST00000468384 ZMYND15Q9H091 742 aa7.09□□□□□ -1.27
HMGB1-207ENST00000468384 HMX1Q9NP08 348 aaPredicted RBP7.09□□□□□ -1.27
HMGB1-207ENST00000468384 MTCH2Q9Y6C9 303 aa7.09□□□□□ -1.27
HMGB1-207ENST00000468384 UBR5O95071 2799 aaPredicted RBP7.09□□□□□ -1.27
HMGB1-207ENST00000468384 GRXCR1A8MXD5 290 aa7.08□□□□□ -1.28
HMGB1-207ENST00000468384 SLURP2P0DP57 97 aa7.08□□□□□ -1.28
HMGB1-207ENST00000468384 POU3F3P20264 500 aaPredicted RBP7.08□□□□□ -1.28
HMGB1-207ENST00000468384 GTF2E1P29083 439 aaPredicted RBP7.08□□□□□ -1.28
HMGB1-207ENST00000468384 RNFT1Q5M7Z0 435 aa7.08□□□□□ -1.28
HMGB1-207ENST00000468384 FBXL6Q8N531 539 aa7.08□□□□□ -1.28
HMGB1-207ENST00000468384 KRTAP4-5Q9BYR2 181 aa7.08□□□□□ -1.28
HMGB1-207ENST00000468384 PRDM5Q9NQX1 630 aaPredicted RBP7.08□□□□□ -1.28
HMGB1-207ENST00000468384 IGF2RP11717 2491 aa7.08□□□□□ -1.28
HMGB1-207ENST00000468384 EVC2Q86UK5 1308 aa7.07□□□□□ -1.28
HMGB1-207ENST00000468384 ARID1BQ8NFD5 2236 aaPredicted RBP7.07□□□□□ -1.28
HMGB1-207ENST00000468384 TMEM221A6NGB7 291 aa7.07□□□□□ -1.28
HMGB1-207ENST00000468384 SPDYE16A6NNV3 312 aaPredicted RBP7.07□□□□□ -1.28
HMGB1-207ENST00000468384 BTBD19C9JJ37 291 aa7.07□□□□□ -1.28
HMGB1-207ENST00000468384 M0R296 226 aa7.07□□□□□ -1.28
HMGB1-207ENST00000468384 IL9P15248 144 aa7.07□□□□□ -1.28
HMGB1-207ENST00000468384 VCPP55072 806 aaKnown RBP7.07□□□□□ -1.28
HMGB1-207ENST00000468384 RTP1P59025 263 aa7.07□□□□□ -1.28
HMGB1-207ENST00000468384 ZNF496Q96IT1 587 aaPredicted RBP7.07□□□□□ -1.28
HMGB1-207ENST00000468384 KRTAP9-8Q9BYQ0 159 aa7.07□□□□□ -1.28
HMGB1-207ENST00000468384 ELP3Q9H9T3 547 aa7.07□□□□□ -1.28
HMGB1-207ENST00000468384 MAST2Q6P0Q8 1798 aa7.07□□□□□ -1.28
HMGB1-207ENST00000468384 TAF4O00268 1085 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 KDM4AO75164 1064 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 STARD3NLO95772 234 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 USP17L8P0C7I0 530 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 LRRC41Q15345 812 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 RSPO4Q2I0M5 234 aaPredicted RBP7.06□□□□□ -1.28
HMGB1-207ENST00000468384 MCTP2Q6DN12 878 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 CLEC4GQ6UXB4 293 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 ANKRD13AQ8IZ07 590 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 MTMR14Q8NCE2 650 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 AGBL3Q8NEM8 1001 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 SPATA18Q8TC71 538 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 EDAQ92838 391 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 SENP6Q9GZR1 1112 aaPredicted RBP7.06□□□□□ -1.28
HMGB1-207ENST00000468384 SLC28A3Q9HAS3 691 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 MSRAQ9UJ68 235 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 NIP7Q9Y221 180 aaKnown RBP eCLIP7.06□□□□□ -1.28
HMGB1-207ENST00000468384 C2CD3Q4AC94 2353 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 KMT2EQ8IZD2 1858 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 ABCC12Q96J65 1359 aa7.06□□□□□ -1.28
HMGB1-207ENST00000468384 PLXNA1Q9UIW2 1896 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 ZBTB24O43167 697 aaPredicted RBP7.05□□□□□ -1.28
HMGB1-207ENST00000468384 ECE2O60344 883 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 HMGCRP04035 888 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 AVPR2P30518 371 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 IREB2P48200 963 aaKnown RBP7.05□□□□□ -1.28
HMGB1-207ENST00000468384 SLC4A3P48751 1232 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 LAMC2Q13753 1193 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 WASHC4Q2M389 1173 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 HERC4Q5GLZ8 1057 aaPredicted RBP7.05□□□□□ -1.28
HMGB1-207ENST00000468384 PIK3R5Q8WYR1 880 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 COG3Q96JB2 828 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 FAM117AQ9C073 453 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 RSPH6AQ9H0K4 717 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 NKX2-4Q9H2Z4 354 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms