RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 DDX60LQ5H9U9 1706 aaKnown RBP29.82■■■□□ 2.36
PTCH1-210ENST00000468211 MS4A1P11836 297 aa29.82■■■□□ 2.36
PTCH1-210ENST00000468211 GJA8P48165 433 aa29.82■■■□□ 2.36
PTCH1-210ENST00000468211 UBXN2AP68543 259 aa29.82■■■□□ 2.36
PTCH1-210ENST00000468211 MAP3K12Q12852 859 aa29.82■■■□□ 2.36
PTCH1-210ENST00000468211 HSP90AB4PQ58FF6 505 aa29.82■■■□□ 2.36
PTCH1-210ENST00000468211 HLA-DOAP06340 250 aa29.81■■■□□ 2.36
PTCH1-210ENST00000468211 USP5P45974 858 aa29.81■■■□□ 2.36
PTCH1-210ENST00000468211 GCLCP48506 637 aaPredicted RBP29.81■■■□□ 2.36
PTCH1-210ENST00000468211 PABPC4Q13310 644 aaKnown RBP eCLIP29.81■■■□□ 2.36
PTCH1-210ENST00000468211 IRF5Q13568 498 aa29.81■■■□□ 2.36
PTCH1-210ENST00000468211 RPAP2Q8IXW5 612 aaPredicted RBP29.81■■■□□ 2.36
PTCH1-210ENST00000468211 DDX19BQ9UMR2 479 aa29.81■■■□□ 2.36
PTCH1-210ENST00000468211 NAV1Q8NEY1 1877 aa29.8■■■□□ 2.36
PTCH1-210ENST00000468211 PEX10O60683 326 aa29.8■■■□□ 2.36
PTCH1-210ENST00000468211 PXYLP1Q8TE99 480 aa29.8■■■□□ 2.36
PTCH1-210ENST00000468211 RIOK1Q9BRS2 568 aaKnown RBP29.8■■■□□ 2.36
PTCH1-210ENST00000468211 INHAP05111 366 aa29.79■■■□□ 2.36
PTCH1-210ENST00000468211 COA7Q96BR5 231 aa29.79■■■□□ 2.36
PTCH1-210ENST00000468211 GCC1Q96CN9 775 aa29.79■■■□□ 2.36
PTCH1-210ENST00000468211 P2RX7Q99572 595 aaKnown RBP29.79■■■□□ 2.36
PTCH1-210ENST00000468211 BCL11AQ9H165 835 aa29.79■■■□□ 2.36
PTCH1-210ENST00000468211 TAOK2Q9UL54 1235 aa29.79■■■□□ 2.36
PTCH1-210ENST00000468211 USP17L10C9JJH3 530 aa29.78■■■□□ 2.36
PTCH1-210ENST00000468211 HOXA7P31268 230 aaPredicted RBP29.78■■■□□ 2.36
PTCH1-210ENST00000468211 HABP4Q5JVS0 413 aaKnown RBP29.78■■■□□ 2.36
PTCH1-210ENST00000468211 TATDN1Q6P1N9 297 aa29.78■■■□□ 2.36
PTCH1-210ENST00000468211 UBE2Q1Q7Z7E8 422 aa29.78■■■□□ 2.36
PTCH1-210ENST00000468211 NKX2-3Q8TAU0 364 aa29.78■■■□□ 2.36
PTCH1-210ENST00000468211 U2AF1L4Q8WU68 220 aaKnown RBP29.78■■■□□ 2.36
PTCH1-210ENST00000468211 KIF1BPQ96EK5 621 aa29.78■■■□□ 2.36
PTCH1-210ENST00000468211 GINM1Q9NU53 330 aa29.78■■■□□ 2.36
PTCH1-210ENST00000468211 TMOD4Q9NZQ9 345 aa29.78■■■□□ 2.36
PTCH1-210ENST00000468211 C19orf81C9J6K1 198 aa29.77■■■□□ 2.36
PTCH1-210ENST00000468211 GH2P01242 217 aa29.77■■■□□ 2.36
PTCH1-210ENST00000468211 CERS3Q8IU89 383 aa29.77■■■□□ 2.36
PTCH1-210ENST00000468211 CLASRPQ8N2M8 674 aaKnown RBP29.77■■■□□ 2.36
PTCH1-210ENST00000468211 MORF4L1Q9UBU8 362 aa29.77■■■□□ 2.36
PTCH1-210ENST00000468211 RCAN3Q9UKA8 241 aa29.77■■■□□ 2.36
PTCH1-210ENST00000468211 PDE6AP16499 860 aa29.76■■■□□ 2.35
PTCH1-210ENST00000468211 IRX3P78415 501 aaPredicted RBP29.76■■■□□ 2.35
PTCH1-210ENST00000468211 EDC3Q96F86 508 aaKnown RBP29.76■■■□□ 2.35
PTCH1-210ENST00000468211 TXNRD2Q9NNW7 524 aa29.76■■■□□ 2.35
PTCH1-210ENST00000468211 EMILIN3Q9NT22 766 aa29.76■■■□□ 2.35
PTCH1-210ENST00000468211 GJD2Q9UKL4 321 aa29.76■■■□□ 2.35
PTCH1-210ENST00000468211 GOLIM4O00461 696 aa29.75■■■□□ 2.35
PTCH1-210ENST00000468211 PLCD1P51178 756 aa29.75■■■□□ 2.35
PTCH1-210ENST00000468211 EVX2Q03828 476 aa29.75■■■□□ 2.35
PTCH1-210ENST00000468211 SLC9C2Q5TAH2 1124 aa29.75■■■□□ 2.35
PTCH1-210ENST00000468211 C20orf194Q5TEA3 1177 aa29.75■■■□□ 2.35
PTCH1-210ENST00000468211 DNAJC2Q99543 621 aaKnown RBP29.75■■■□□ 2.35
PTCH1-210ENST00000468211 EHD4Q9H223 541 aa29.75■■■□□ 2.35
PTCH1-210ENST00000468211 SERPINB13Q9UIV8 391 aa29.75■■■□□ 2.35
PTCH1-210ENST00000468211 H0YGN5 161 aa29.74■■■□□ 2.35
PTCH1-210ENST00000468211 HMMRO75330 724 aa29.74■■■□□ 2.35
PTCH1-210ENST00000468211 HERVK_113P62684 666 aa29.74■■■□□ 2.35
PTCH1-210ENST00000468211 TTF1Q15361 905 aaPredicted RBP29.74■■■□□ 2.35
PTCH1-210ENST00000468211 TMED8Q6PL24 325 aaPredicted RBP29.74■■■□□ 2.35
PTCH1-210ENST00000468211 POTEEQ6S8J3 1075 aa29.74■■■□□ 2.35
PTCH1-210ENST00000468211 PPIL4Q8WUA2 492 aaKnown RBP eCLIP29.74■■■□□ 2.35
PTCH1-210ENST00000468211 MAGEB6P1A0A0J9YX57 407 aa29.73■■■□□ 2.35
PTCH1-210ENST00000468211 TCRBV5S4A2TA0A5A2 114 aa29.73■■■□□ 2.35
PTCH1-210ENST00000468211 SGPL1O95470 568 aa29.73■■■□□ 2.35
PTCH1-210ENST00000468211 IFIT2P09913 472 aaKnown RBP29.73■■■□□ 2.35
PTCH1-210ENST00000468211 ZNF532Q9HCE3 1301 aa29.72■■■□□ 2.35
PTCH1-210ENST00000468211 TTC6Q86TZ1 520 aa29.72■■■□□ 2.35
PTCH1-210ENST00000468211 RBPJLQ9UBG7 517 aa29.72■■■□□ 2.35
PTCH1-210ENST00000468211 RAB11FIP3O75154 756 aa29.71■■■□□ 2.35
PTCH1-210ENST00000468211 SHMT1P34896 483 aa29.71■■■□□ 2.35
PTCH1-210ENST00000468211 SLFNL1Q499Z3 407 aa29.71■■■□□ 2.35
PTCH1-210ENST00000468211 USP17L2Q6R6M4 530 aa29.71■■■□□ 2.35
PTCH1-210ENST00000468211 DEFB118Q96PH6 123 aa29.71■■■□□ 2.35
PTCH1-210ENST00000468211 PAK6Q9NQU5 681 aaPredicted RBP29.71■■■□□ 2.35
PTCH1-210ENST00000468211 TRIM32Q13049 653 aa29.7■■■□□ 2.35
PTCH1-210ENST00000468211 ZYXQ15942 572 aaKnown RBP29.7■■■□□ 2.35
PTCH1-210ENST00000468211 Q3C1V9 767 aa29.7■■■□□ 2.35
PTCH1-210ENST00000468211 CERKLQ49MI3 558 aaPredicted RBP29.7■■■□□ 2.35
PTCH1-210ENST00000468211 COLQQ9Y215 455 aaPredicted RBP29.7■■■□□ 2.35
PTCH1-210ENST00000468211 MYH7P12883 1935 aa29.7■■■□□ 2.34
PTCH1-210ENST00000468211 BAZ2AQ9UIF9 1905 aaKnown RBP29.7■■■□□ 2.34
PTCH1-210ENST00000468211 FARP2O94887 1054 aaPredicted RBP29.69■■■□□ 2.34
PTCH1-210ENST00000468211 RAB3GAP1Q15042 981 aa29.69■■■□□ 2.34
PTCH1-210ENST00000468211 LCORLQ8N3X6 602 aa29.69■■■□□ 2.34
PTCH1-210ENST00000468211 ACER1Q8TDN7 264 aa29.69■■■□□ 2.34
PTCH1-210ENST00000468211 DPF3Q92784 378 aa29.69■■■□□ 2.34
PTCH1-210ENST00000468211 GUCY1A2P33402 732 aa29.68■■■□□ 2.34
PTCH1-210ENST00000468211 GABPAQ06546 454 aa29.68■■■□□ 2.34
PTCH1-210ENST00000468211 ABCB5Q2M3G0 1257 aa29.68■■■□□ 2.34
PTCH1-210ENST00000468211 GPRC5AQ8NFJ5 357 aa29.68■■■□□ 2.34
PTCH1-210ENST00000468211 SDR42E1Q8WUS8 393 aa29.68■■■□□ 2.34
PTCH1-210ENST00000468211 C12orf42Q96LP6 360 aa29.68■■■□□ 2.34
PTCH1-210ENST00000468211 CRNKL1Q9BZJ0 848 aaKnown RBP29.68■■■□□ 2.34
PTCH1-210ENST00000468211 BOLA2Q9H3K6 86 aa29.68■■■□□ 2.34
PTCH1-210ENST00000468211 MYH8P13535 1937 aa29.67■■■□□ 2.34
PTCH1-210ENST00000468211 CHGBP05060 677 aa29.67■■■□□ 2.34
PTCH1-210ENST00000468211 POLR3DP05423 398 aaPredicted RBP29.67■■■□□ 2.34
PTCH1-210ENST00000468211 FEZ1Q99689 392 aa29.67■■■□□ 2.34
PTCH1-210ENST00000468211 ALPK3Q96L96 1907 aa29.67■■■□□ 2.34
PTCH1-210ENST00000468211 TFRCP02786 760 aaKnown RBP29.66■■■□□ 2.34
PTCH1-210ENST00000468211 HMGCRP04035 888 aa29.66■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms