RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 GBF1Q92538 1859 aa12.11□□□□□ -0.47
USP39-212ENST00000465514 DDTLA6NHG4 134 aaPredicted RBP12.11□□□□□ -0.47
USP39-212ENST00000465514 DNM1LO00429 736 aa12.11□□□□□ -0.47
USP39-212ENST00000465514 PRDX5P30044 214 aa12.11□□□□□ -0.47
USP39-212ENST00000465514 RGS2P41220 211 aa12.11□□□□□ -0.47
USP39-212ENST00000465514 MRPS5P82675 430 aaKnown RBP12.11□□□□□ -0.47
USP39-212ENST00000465514 MAP3K10Q02779 954 aa12.11□□□□□ -0.47
USP39-212ENST00000465514 ALDH1L2Q3SY69 923 aa12.11□□□□□ -0.47
USP39-212ENST00000465514 POTEEQ6S8J3 1075 aa12.11□□□□□ -0.47
USP39-212ENST00000465514 IL27Q8NEV9 243 aa12.11□□□□□ -0.47
USP39-212ENST00000465514 USP6NLQ92738 828 aa12.11□□□□□ -0.47
USP39-212ENST00000465514 CDCA7LQ96GN5 454 aa12.11□□□□□ -0.47
USP39-212ENST00000465514 NECAB3Q96P71 396 aaPredicted RBP12.11□□□□□ -0.47
USP39-212ENST00000465514 TXNRD2Q9NNW7 524 aa12.11□□□□□ -0.47
USP39-212ENST00000465514 PDLIM7Q9NR12 457 aa12.11□□□□□ -0.47
USP39-212ENST00000465514 ENTPD3O75355 529 aa12.1□□□□□ -0.47
USP39-212ENST00000465514 SLC5A1P13866 664 aa12.1□□□□□ -0.47
USP39-212ENST00000465514 TRIM60Q495X7 471 aa12.1□□□□□ -0.47
USP39-212ENST00000465514 ATG9AQ7Z3C6 839 aa12.1□□□□□ -0.47
USP39-212ENST00000465514 SH3RF1Q7Z6J0 888 aa12.1□□□□□ -0.47
USP39-212ENST00000465514 ZNF280CQ8ND82 737 aa12.1□□□□□ -0.47
USP39-212ENST00000465514 WDR66Q8TBY9 1149 aa12.1□□□□□ -0.47
USP39-212ENST00000465514 LPIN2Q92539 896 aa12.1□□□□□ -0.47
USP39-212ENST00000465514 LPAR1Q92633 364 aa12.1□□□□□ -0.47
USP39-212ENST00000465514 IDI2Q9BXS1 227 aa12.1□□□□□ -0.47
USP39-212ENST00000465514 ZNF576Q9H609 170 aa12.1□□□□□ -0.47
USP39-212ENST00000465514 SMC4Q9NTJ3 1288 aa12.1□□□□□ -0.47
USP39-212ENST00000465514 DDX20Q9UHI6 824 aaKnown RBP12.1□□□□□ -0.47
USP39-212ENST00000465514 TRIM43BA6NCK2 446 aa12.09□□□□□ -0.47
USP39-212ENST00000465514 FAM196BA6NMK8 535 aa12.09□□□□□ -0.47
USP39-212ENST00000465514 MAPK4P31152 587 aa12.09□□□□□ -0.47
USP39-212ENST00000465514 EPHB4P54760 987 aa12.09□□□□□ -0.47
USP39-212ENST00000465514 IRX3P78415 501 aaPredicted RBP12.09□□□□□ -0.47
USP39-212ENST00000465514 MORN1Q5T089 497 aa12.09□□□□□ -0.47
USP39-212ENST00000465514 GPR142Q7Z601 462 aa12.09□□□□□ -0.47
USP39-212ENST00000465514 GPRC5AQ8NFJ5 357 aa12.09□□□□□ -0.47
USP39-212ENST00000465514 TRIM43Q96BQ3 446 aaPredicted RBP12.09□□□□□ -0.47
USP39-212ENST00000465514 GAS2L1Q99501 681 aaPredicted RBP12.09□□□□□ -0.47
USP39-212ENST00000465514 PORCNQ9H237 461 aa12.09□□□□□ -0.47
USP39-212ENST00000465514 LDHBP07195 334 aaKnown RBP12.08□□□□□ -0.48
USP39-212ENST00000465514 UBTFL1P0CB47 393 aaPredicted RBP12.08□□□□□ -0.48
USP39-212ENST00000465514 CNGA1P29973 690 aa12.08□□□□□ -0.48
USP39-212ENST00000465514 HERVK_113P62684 666 aa12.08□□□□□ -0.48
USP39-212ENST00000465514 PICALMQ13492 652 aa12.08□□□□□ -0.48
USP39-212ENST00000465514 AKNAD1Q5T1N1 836 aa12.08□□□□□ -0.48
USP39-212ENST00000465514 GJC2Q5T442 439 aaPredicted RBP12.08□□□□□ -0.48
USP39-212ENST00000465514 SLC39A5Q6ZMH5 540 aa12.08□□□□□ -0.48
USP39-212ENST00000465514 TRMT2AQ8IZ69 625 aaKnown RBP12.08□□□□□ -0.48
USP39-212ENST00000465514 SNX27Q96L92 541 aa12.08□□□□□ -0.48
USP39-212ENST00000465514 LRFN3Q9BTN0 628 aa12.08□□□□□ -0.48
USP39-212ENST00000465514 SIL1Q9H173 461 aa12.08□□□□□ -0.48
USP39-212ENST00000465514 DDX4Q9NQI0 724 aaKnown RBP12.08□□□□□ -0.48
USP39-212ENST00000465514 FLRT1Q9NZU1 646 aa12.08□□□□□ -0.48
USP39-212ENST00000465514 SIPA1L1O43166 1804 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 MSCO60682 206 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 CIAO1O76071 339 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 ERVK-9P63128 1117 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 ERVK-24P63145 666 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 SNX17Q15036 470 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 CCDC85BQ15834 202 aaPredicted RBP12.07□□□□□ -0.48
USP39-212ENST00000465514 ATP2B3Q16720 1220 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 MFSD14CQ5VZR4 134 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 PLEKHH3Q7Z736 793 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 CCAR1Q8IX12 1150 aaKnown RBP12.07□□□□□ -0.48
USP39-212ENST00000465514 TIFAQ96CG3 184 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 P2RX7Q99572 595 aaKnown RBP12.07□□□□□ -0.48
USP39-212ENST00000465514 PRDM12Q9H4Q4 367 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 CEP126Q9P2H0 1117 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 FBXO3Q9UK99 471 aa12.07□□□□□ -0.48
USP39-212ENST00000465514 NOB1Q9ULX3 412 aaKnown RBP12.07□□□□□ -0.48
USP39-212ENST00000465514 TRANK1O15050 2925 aa12.06□□□□□ -0.48
USP39-212ENST00000465514 ITGB8P26012 769 aa12.06□□□□□ -0.48
USP39-212ENST00000465514 MAP2K5Q13163 448 aa12.06□□□□□ -0.48
USP39-212ENST00000465514 MTMR2Q13614 643 aa12.06□□□□□ -0.48
USP39-212ENST00000465514 Q3C1V9 767 aa12.06□□□□□ -0.48
USP39-212ENST00000465514 SH3D19Q5HYK7 790 aa12.06□□□□□ -0.48
USP39-212ENST00000465514 ALYREFQ86V81 257 aaKnown RBP12.06□□□□□ -0.48
USP39-212ENST00000465514 PAGR1Q9BTK6 254 aa12.06□□□□□ -0.48
USP39-212ENST00000465514 TBC1D2Q9BYX2 928 aa12.06□□□□□ -0.48
USP39-212ENST00000465514 OSBPL5Q9H0X9 879 aaPredicted RBP12.06□□□□□ -0.48
USP39-212ENST00000465514 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.06□□□□□ -0.48
USP39-212ENST00000465514 GNL3LQ9NVN8 582 aaKnown RBP12.06□□□□□ -0.48
USP39-212ENST00000465514 RBPJLQ9UBG7 517 aa12.06□□□□□ -0.48
USP39-212ENST00000465514 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.05□□□□□ -0.48
USP39-212ENST00000465514 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.05□□□□□ -0.48
USP39-212ENST00000465514 USP17L5A8MUK1 530 aa12.05□□□□□ -0.48
USP39-212ENST00000465514 KBTBD13C9JR72 458 aa12.05□□□□□ -0.48
USP39-212ENST00000465514 TBC1D12O60347 775 aa12.05□□□□□ -0.48
USP39-212ENST00000465514 CT47B1P0C2W7 299 aaPredicted RBP12.05□□□□□ -0.48
USP39-212ENST00000465514 IL15P40933 162 aaPredicted RBP12.05□□□□□ -0.48
USP39-212ENST00000465514 PHKA1P46020 1223 aa12.05□□□□□ -0.48
USP39-212ENST00000465514 TRPV1Q8NER1 839 aa12.05□□□□□ -0.48
USP39-212ENST00000465514 API5Q9BZZ5 524 aaKnown RBP12.05□□□□□ -0.48
USP39-212ENST00000465514 CWC22Q9HCG8 908 aaKnown RBP12.05□□□□□ -0.48
USP39-212ENST00000465514 PA2G4Q9UQ80 394 aaKnown RBP12.05□□□□□ -0.48
USP39-212ENST00000465514 NDUFB9Q9Y6M9 179 aa12.05□□□□□ -0.48
USP39-212ENST00000465514 LRRC37A2A6NM11 1700 aa12.05□□□□□ -0.48
USP39-212ENST00000465514 GAKO14976 1311 aa12.05□□□□□ -0.48
USP39-212ENST00000465514 HOXA7P31268 230 aaPredicted RBP12.04□□□□□ -0.48
USP39-212ENST00000465514 CYP2C19P33261 490 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms