RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 CNNM2Q9H8M5 875 aa12.04□□□□□ -0.48
UPF2-204ENST00000460569 TSPY2A6NKD2 308 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 PHF20L1A8MW92 1017 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 USP2O75604 605 aaPredicted RBP12.03□□□□□ -0.48
UPF2-204ENST00000460569 FGRP09769 529 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 AKR1B1P15121 316 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 INPP5BP32019 993 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 FKBP1BP68106 108 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 KRT32Q14532 448 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 RRP1BQ14684 758 aaKnown RBP12.03□□□□□ -0.48
UPF2-204ENST00000460569 ABCB5Q2M3G0 1257 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 SHROOM1Q2M3G4 852 aaPredicted RBP12.03□□□□□ -0.48
UPF2-204ENST00000460569 CST9Q5W186 159 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.03□□□□□ -0.48
UPF2-204ENST00000460569 NCOA7Q8NI08 942 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 ESR2Q92731 530 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 KCNB2Q92953 911 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 CCDC17Q96LX7 622 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.03□□□□□ -0.48
UPF2-204ENST00000460569 ZNF112Q9UJU3 913 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 MYH4Q9Y623 1939 aa12.03□□□□□ -0.48
UPF2-204ENST00000460569 PHIPQ8WWQ0 1821 aa12.02□□□□□ -0.48
UPF2-204ENST00000460569 UBE2Q2LH0YL09 131 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 CTNND1O60716 968 aaKnown RBP12.02□□□□□ -0.49
UPF2-204ENST00000460569 KDM4AO75164 1064 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 GH2P01242 217 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 TSPY3P0CV98 308 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 TSPY8P0CW00 308 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 CAP2P40123 477 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 ANAPC15P60006 121 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 TFAP4Q01664 338 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 MAP3K11Q16584 847 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 ADCK5Q3MIX3 580 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 TSGA10IPQ3SY00 556 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 FAM47AQ5JRC9 791 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 ANKRD13AQ8IZ07 590 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 SCYL3Q8IZE3 742 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 ZKSCAN4Q969J2 545 aaPredicted RBP12.02□□□□□ -0.49
UPF2-204ENST00000460569 JAKMIP1Q96N16 626 aaKnown RBP12.02□□□□□ -0.49
UPF2-204ENST00000460569 CABP5Q9NP86 173 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 ZBTB21Q9ULJ3 1066 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 CSADQ9Y600 493 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 PLIN4Q96Q06 1357 aa12.02□□□□□ -0.49
UPF2-204ENST00000460569 MAP3K9P80192 1104 aa12.01□□□□□ -0.49
UPF2-204ENST00000460569 VGLL4Q14135 290 aa12.01□□□□□ -0.49
UPF2-204ENST00000460569 NOL9Q5SY16 702 aaKnown RBP12.01□□□□□ -0.49
UPF2-204ENST00000460569 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.01□□□□□ -0.49
UPF2-204ENST00000460569 TMEM179Q6ZVK1 233 aa12.01□□□□□ -0.49
UPF2-204ENST00000460569 NKX2-3Q8TAU0 364 aa12.01□□□□□ -0.49
UPF2-204ENST00000460569 CLMNQ96JQ2 1002 aa12.01□□□□□ -0.49
UPF2-204ENST00000460569 TBC1D32Q96NH3 1257 aa12.01□□□□□ -0.49
UPF2-204ENST00000460569 NEK1Q96PY6 1258 aa12.01□□□□□ -0.49
UPF2-204ENST00000460569 PICK1Q9NRD5 415 aa12.01□□□□□ -0.49
UPF2-204ENST00000460569 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.01□□□□□ -0.49
UPF2-204ENST00000460569 TMEM88BA6NKF7 163 aa12□□□□□ -0.49
UPF2-204ENST00000460569 ASNSP08243 561 aa12□□□□□ -0.49
UPF2-204ENST00000460569 CASTP20810 708 aaKnown RBP12□□□□□ -0.49
UPF2-204ENST00000460569 PSMA5P28066 241 aa12□□□□□ -0.49
UPF2-204ENST00000460569 RBM25P49756 843 aaKnown RBP12□□□□□ -0.49
UPF2-204ENST00000460569 NT5C2P49902 561 aa12□□□□□ -0.49
UPF2-204ENST00000460569 HUNKP57058 714 aa12□□□□□ -0.49
UPF2-204ENST00000460569 JAG1P78504 1218 aa12□□□□□ -0.49
UPF2-204ENST00000460569 RAB3GAP1Q15042 981 aa12□□□□□ -0.49
UPF2-204ENST00000460569 BLOC1S2Q6QNY1 142 aa12□□□□□ -0.49
UPF2-204ENST00000460569 CYB5R4Q7L1T6 521 aa12□□□□□ -0.49
UPF2-204ENST00000460569 CCDC84Q86UT8 332 aaPredicted RBP12□□□□□ -0.49
UPF2-204ENST00000460569 CLEC10AQ8IUN9 316 aa12□□□□□ -0.49
UPF2-204ENST00000460569 MB21D2Q8IYB1 491 aaPredicted RBP12□□□□□ -0.49
UPF2-204ENST00000460569 NEDD1Q8NHV4 660 aa12□□□□□ -0.49
UPF2-204ENST00000460569 ZKSCAN3Q9BRR0 538 aa12□□□□□ -0.49
UPF2-204ENST00000460569 ELP3Q9H9T3 547 aa12□□□□□ -0.49
UPF2-204ENST00000460569 GINM1Q9NU53 330 aa12□□□□□ -0.49
UPF2-204ENST00000460569 ABT1Q9ULW3 272 aaKnown RBP12□□□□□ -0.49
UPF2-204ENST00000460569 SNCAIPQ9Y6H5 919 aa12□□□□□ -0.49
UPF2-204ENST00000460569 PRC1O43663 620 aa11.99□□□□□ -0.49
UPF2-204ENST00000460569 HMGB1P09429 215 aaKnown RBP11.99□□□□□ -0.49
UPF2-204ENST00000460569 CPA1P15085 419 aa11.99□□□□□ -0.49
UPF2-204ENST00000460569 MCM5P33992 734 aa11.99□□□□□ -0.49
UPF2-204ENST00000460569 ICA1Q05084 483 aa11.99□□□□□ -0.49
UPF2-204ENST00000460569 COL9A3Q14050 684 aaPredicted RBP11.99□□□□□ -0.49
UPF2-204ENST00000460569 SEPT2Q15019 361 aa11.99□□□□□ -0.49
UPF2-204ENST00000460569 LDLRAD1Q5T700 205 aa11.99□□□□□ -0.49
UPF2-204ENST00000460569 CHST3Q7LGC8 479 aa11.99□□□□□ -0.49
UPF2-204ENST00000460569 IQCA1Q86XH1 822 aa11.99□□□□□ -0.49
UPF2-204ENST00000460569 UBAC1Q9BSL1 405 aa11.99□□□□□ -0.49
UPF2-204ENST00000460569 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.99□□□□□ -0.49
UPF2-204ENST00000460569 ZSWIM5Q9P217 1185 aa11.99□□□□□ -0.49
UPF2-204ENST00000460569 PTPRFP10586 1907 aa11.99□□□□□ -0.49
UPF2-204ENST00000460569 TNKSO95271 1327 aa11.98□□□□□ -0.49
UPF2-204ENST00000460569 USP17L5A8MUK1 530 aa11.98□□□□□ -0.49
UPF2-204ENST00000460569 NMT2O60551 498 aa11.98□□□□□ -0.49
UPF2-204ENST00000460569 PTPRAP18433 802 aa11.98□□□□□ -0.49
UPF2-204ENST00000460569 GUCY1A2P33402 732 aa11.98□□□□□ -0.49
UPF2-204ENST00000460569 APLP1P51693 650 aa11.98□□□□□ -0.49
UPF2-204ENST00000460569 ANTXR2P58335 489 aa11.98□□□□□ -0.49
UPF2-204ENST00000460569 ATP2B2Q01814 1243 aa11.98□□□□□ -0.49
UPF2-204ENST00000460569 SART3Q15020 963 aaKnown RBP11.98□□□□□ -0.49
UPF2-204ENST00000460569 SAPCD2Q86UD0 394 aa11.98□□□□□ -0.49
UPF2-204ENST00000460569 CEP95Q96GE4 821 aa11.98□□□□□ -0.49
UPF2-204ENST00000460569 TCEANC2Q96MN5 208 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms