RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 GPIHBP1Q8IV16 184 aa13.69□□□□□ -0.22
SMPD4-213ENST00000454468 DHX40Q8IX18 779 aaKnown RBP13.69□□□□□ -0.22
SMPD4-213ENST00000454468 PDCL2Q8N4E4 241 aa13.69□□□□□ -0.22
SMPD4-213ENST00000454468 NYXQ9GZU5 481 aa13.69□□□□□ -0.22
SMPD4-213ENST00000454468 TMX4Q9H1E5 349 aaPredicted RBP13.69□□□□□ -0.22
SMPD4-213ENST00000454468 CEP131Q9UPN4 1083 aa13.69□□□□□ -0.22
SMPD4-213ENST00000454468 USP17L3A6NCW0 530 aa13.69□□□□□ -0.22
SMPD4-213ENST00000454468 USP17L4A6NCW7 530 aa13.69□□□□□ -0.22
SMPD4-213ENST00000454468 FMNL1O95466 1100 aaPredicted RBP13.69□□□□□ -0.22
SMPD4-213ENST00000454468 IFNAR1P17181 557 aa13.69□□□□□ -0.22
SMPD4-213ENST00000454468 NOM1Q5C9Z4 860 aaKnown RBP13.69□□□□□ -0.22
SMPD4-213ENST00000454468 PPP4R3BQ5MIZ7 849 aa13.69□□□□□ -0.22
SMPD4-213ENST00000454468 USP17L1Q7RTZ2 530 aa13.69□□□□□ -0.22
SMPD4-213ENST00000454468 TACC3Q9Y6A5 838 aa13.69□□□□□ -0.22
SMPD4-213ENST00000454468 MRC1P22897 1456 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 CCDC194A0A1B0GVG4 234 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 A0A1W2PQ27 194 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 A0A1W2PQ64 194 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 A0A1W2PQD8 194 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 MMP1P03956 469 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 MYL5Q02045 173 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 RILPL1Q5EBL4 403 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 BSDC1Q9NW68 430 aaPredicted RBP13.68□□□□□ -0.22
SMPD4-213ENST00000454468 NFE2L3Q9Y4A8 694 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 ERCC3P19447 782 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 LIFRP42702 1097 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 SYT10Q6XYQ8 523 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 ZSCAN29Q8IWY8 852 aaPredicted RBP13.68□□□□□ -0.22
SMPD4-213ENST00000454468 ZSWIM4Q9H7M6 989 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 CUTAO60888 179 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 NFIXQ14938 502 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 MYRIPQ8NFW9 859 aa13.68□□□□□ -0.22
SMPD4-213ENST00000454468 GOLGB1Q14789 3259 aaKnown RBP13.67□□□□□ -0.22
SMPD4-213ENST00000454468 URI1O94763 535 aaPredicted RBP13.67□□□□□ -0.22
SMPD4-213ENST00000454468 KRBA2Q6ZNG9 492 aa13.67□□□□□ -0.22
SMPD4-213ENST00000454468 PRIMPOLQ96LW4 560 aa13.67□□□□□ -0.22
SMPD4-213ENST00000454468 SALL1Q9NSC2 1324 aa13.67□□□□□ -0.22
SMPD4-213ENST00000454468 PRR29P0C7W0 189 aa13.67□□□□□ -0.22
SMPD4-213ENST00000454468 POSTNQ15063 836 aa13.67□□□□□ -0.22
SMPD4-213ENST00000454468 AXDND1Q5T1B0 1012 aaPredicted RBP13.67□□□□□ -0.22
SMPD4-213ENST00000454468 PLA2G4DQ86XP0 818 aa13.67□□□□□ -0.22
SMPD4-213ENST00000454468 BCL2L12Q9HB09 334 aa13.67□□□□□ -0.22
SMPD4-213ENST00000454468 FAM217BQ9NTX9 383 aaPredicted RBP13.67□□□□□ -0.22
SMPD4-213ENST00000454468 DNAI1Q9UI46 699 aa13.67□□□□□ -0.22
SMPD4-213ENST00000454468 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.67□□□□□ -0.22
SMPD4-213ENST00000454468 CCT6AP40227 531 aaKnown RBP13.67□□□□□ -0.22
SMPD4-213ENST00000454468 ADKP55263 362 aaKnown RBP13.67□□□□□ -0.22
SMPD4-213ENST00000454468 IKQ13123 557 aaPredicted RBP13.67□□□□□ -0.22
SMPD4-213ENST00000454468 CTR9Q6PD62 1173 aa13.67□□□□□ -0.22
SMPD4-213ENST00000454468 ZNF142P52746 1687 aaPredicted RBP13.67□□□□□ -0.22
SMPD4-213ENST00000454468 KCPQ6ZWJ8 1503 aa13.67□□□□□ -0.22
SMPD4-213ENST00000454468 BAG3O95817 575 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 STAG1Q8WVM7 1258 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 TMEM232C9JQI7 657 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 SSBP05455 408 aaKnown RBP eCLIP13.66□□□□□ -0.22
SMPD4-213ENST00000454468 DPF2Q92785 391 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 ABCC12Q96J65 1359 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 JCADQ9P266 1359 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 ALS2Q96Q42 1657 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 VGLL3A8MV65 326 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 PTGDRQ13258 359 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 TTC38Q5R3I4 469 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 RRAGBQ5VZM2 374 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 MNS1Q8NEH6 495 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 KIF18AQ8NI77 898 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 ANKRD2Q9GZV1 360 aa13.66□□□□□ -0.22
SMPD4-213ENST00000454468 RTL9Q8NET4 1388 aa13.65□□□□□ -0.22
SMPD4-213ENST00000454468 KARSQ15046 597 aaKnown RBP13.65□□□□□ -0.22
SMPD4-213ENST00000454468 NTRK3Q16288 839 aa13.65□□□□□ -0.22
SMPD4-213ENST00000454468 TEX11Q8IYF3 940 aa13.65□□□□□ -0.22
SMPD4-213ENST00000454468 SPATA31A5Q5VU36 1347 aa13.65□□□□□ -0.22
SMPD4-213ENST00000454468 SPATA31A7Q8IWB4 1347 aa13.65□□□□□ -0.22
SMPD4-213ENST00000454468 CBFA2T2O43439 604 aa13.65□□□□□ -0.22
SMPD4-213ENST00000454468 TXLNAP40222 546 aa13.65□□□□□ -0.22
SMPD4-213ENST00000454468 SGMS1Q86VZ5 419 aa13.65□□□□□ -0.22
SMPD4-213ENST00000454468 SH3RF3Q8TEJ3 882 aaPredicted RBP13.65□□□□□ -0.22
SMPD4-213ENST00000454468 ZNF622Q969S3 477 aaKnown RBP eCLIP13.65□□□□□ -0.22
SMPD4-213ENST00000454468 DCP1AQ9NPI6 582 aaPredicted RBP13.65□□□□□ -0.22
SMPD4-213ENST00000454468 VEGFAP15692 232 aaPredicted RBP13.65□□□□□ -0.23
SMPD4-213ENST00000454468 GSDMDP57764 484 aa13.65□□□□□ -0.23
SMPD4-213ENST00000454468 SOGA3Q5TF21 947 aa13.65□□□□□ -0.23
SMPD4-213ENST00000454468 MSL1Q68DK7 614 aa13.65□□□□□ -0.23
SMPD4-213ENST00000454468 PPFIBP1Q86W92 1011 aa13.65□□□□□ -0.23
SMPD4-213ENST00000454468 PNMA1Q8ND90 353 aa13.65□□□□□ -0.23
SMPD4-213ENST00000454468 SYMPKQ92797 1274 aaKnown RBP13.65□□□□□ -0.23
SMPD4-213ENST00000454468 UBA5Q9GZZ9 404 aa13.65□□□□□ -0.23
SMPD4-213ENST00000454468 TNS2Q63HR2 1409 aa13.64□□□□□ -0.23
SMPD4-213ENST00000454468 KIF5BP33176 963 aa13.64□□□□□ -0.23
SMPD4-213ENST00000454468 GTF2IP78347 998 aa13.64□□□□□ -0.23
SMPD4-213ENST00000454468 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.64□□□□□ -0.23
SMPD4-213ENST00000454468 SAMSN1Q9NSI8 373 aaKnown RBP13.64□□□□□ -0.23
SMPD4-213ENST00000454468 ARFGEF2Q9Y6D5 1785 aa13.64□□□□□ -0.23
SMPD4-213ENST00000454468 TRIM37O94972 964 aa13.64□□□□□ -0.23
SMPD4-213ENST00000454468 SCNN1DP51172 638 aa13.64□□□□□ -0.23
SMPD4-213ENST00000454468 DOK7Q18PE1 504 aa13.64□□□□□ -0.23
SMPD4-213ENST00000454468 LETM2Q2VYF4 491 aa13.64□□□□□ -0.23
SMPD4-213ENST00000454468 MFSD14BQ5SR56 506 aa13.64□□□□□ -0.23
SMPD4-213ENST00000454468 SPTY2D1Q68D10 685 aaPredicted RBP13.64□□□□□ -0.23
SMPD4-213ENST00000454468 RASGRP2Q7LDG7 609 aa13.64□□□□□ -0.23
SMPD4-213ENST00000454468 METTL16Q86W50 562 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms