RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ADD2P35612 726 aa14.58□□□□□ -0.08
USP40-210ENST00000454354 HMGCS2P54868 508 aa14.58□□□□□ -0.08
USP40-210ENST00000454354 TTC6Q86TZ1 520 aa14.58□□□□□ -0.08
USP40-210ENST00000454354 CRNKL1Q9BZJ0 848 aaKnown RBP14.58□□□□□ -0.08
USP40-210ENST00000454354 ECHDC1Q9NTX5 307 aa14.58□□□□□ -0.08
USP40-210ENST00000454354 PNMA3Q9UL41 463 aa14.58□□□□□ -0.08
USP40-210ENST00000454354 PCDHB15Q9Y5E8 787 aa14.58□□□□□ -0.08
USP40-210ENST00000454354 MKI67P46013 3256 aaKnown RBP14.58□□□□□ -0.08
USP40-210ENST00000454354 PSMC4P43686 418 aa14.57□□□□□ -0.08
USP40-210ENST00000454354 BACE1P56817 501 aa14.57□□□□□ -0.08
USP40-210ENST00000454354 PABPC4Q13310 644 aaKnown RBP eCLIP14.57□□□□□ -0.08
USP40-210ENST00000454354 SHROOM1Q2M3G4 852 aaPredicted RBP14.57□□□□□ -0.08
USP40-210ENST00000454354 SLC4A8Q2Y0W8 1093 aa14.57□□□□□ -0.08
USP40-210ENST00000454354 LCORLQ8N3X6 602 aa14.57□□□□□ -0.08
USP40-210ENST00000454354 ZNF333Q96JL9 665 aa14.57□□□□□ -0.08
USP40-210ENST00000454354 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.57□□□□□ -0.08
USP40-210ENST00000454354 BCL11AQ9H165 835 aa14.57□□□□□ -0.08
USP40-210ENST00000454354 SRRDQ9UH36 339 aa14.57□□□□□ -0.08
USP40-210ENST00000454354 OSBPP22059 807 aa14.56□□□□□ -0.08
USP40-210ENST00000454354 GABPAQ06546 454 aa14.56□□□□□ -0.08
USP40-210ENST00000454354 MTMR2Q13614 643 aa14.56□□□□□ -0.08
USP40-210ENST00000454354 UBE3CQ15386 1083 aa14.56□□□□□ -0.08
USP40-210ENST00000454354 SLC9C1Q4G0N8 1177 aa14.56□□□□□ -0.08
USP40-210ENST00000454354 SMCR8Q8TEV9 937 aaPredicted RBP14.56□□□□□ -0.08
USP40-210ENST00000454354 DCP1AQ9NPI6 582 aaPredicted RBP14.56□□□□□ -0.08
USP40-210ENST00000454354 TAOK2Q9UL54 1235 aa14.56□□□□□ -0.08
USP40-210ENST00000454354 PARP14Q460N5 1801 aa14.56□□□□□ -0.08
USP40-210ENST00000454354 GREB1LQ9C091 1923 aaPredicted RBP14.56□□□□□ -0.08
USP40-210ENST00000454354 C19orf81C9J6K1 198 aa14.55□□□□□ -0.08
USP40-210ENST00000454354 USP17L10C9JJH3 530 aa14.55□□□□□ -0.08
USP40-210ENST00000454354 HOXD10P28358 340 aa14.55□□□□□ -0.08
USP40-210ENST00000454354 SHMT1P34896 483 aa14.55□□□□□ -0.08
USP40-210ENST00000454354 PLCD1P51178 756 aa14.55□□□□□ -0.08
USP40-210ENST00000454354 FCGRTP55899 365 aa14.55□□□□□ -0.08
USP40-210ENST00000454354 FAM110CQ1W6H9 321 aa14.55□□□□□ -0.08
USP40-210ENST00000454354 NBPF11Q86T75 865 aa14.55□□□□□ -0.08
USP40-210ENST00000454354 SDR42E1Q8WUS8 393 aa14.55□□□□□ -0.08
USP40-210ENST00000454354 GPATCH3Q96I76 525 aa14.55□□□□□ -0.08
USP40-210ENST00000454354 RLFQ13129 1914 aa14.54□□□□□ -0.08
USP40-210ENST00000454354 MBD4O95243 580 aa14.54□□□□□ -0.08
USP40-210ENST00000454354 FMNL1O95466 1100 aaPredicted RBP14.54□□□□□ -0.08
USP40-210ENST00000454354 GH2P01242 217 aa14.54□□□□□ -0.08
USP40-210ENST00000454354 HOXA7P31268 230 aaPredicted RBP14.54□□□□□ -0.08
USP40-210ENST00000454354 GCLCP48506 637 aaPredicted RBP14.54□□□□□ -0.08
USP40-210ENST00000454354 SLFNL1Q499Z3 407 aa14.54□□□□□ -0.08
USP40-210ENST00000454354 ZSCAN25Q6NSZ9 544 aa14.54□□□□□ -0.08
USP40-210ENST00000454354 YTHDC1Q96MU7 727 aaKnown RBP14.54□□□□□ -0.08
USP40-210ENST00000454354 ASCC2Q9H1I8 757 aaPredicted RBP14.54□□□□□ -0.08
USP40-210ENST00000454354 ARMT1Q9H993 441 aa14.54□□□□□ -0.08
USP40-210ENST00000454354 ATP8A2Q9NTI2 1148 aa14.54□□□□□ -0.08
USP40-210ENST00000454354 MCM9Q9NXL9 1143 aa14.54□□□□□ -0.08
USP40-210ENST00000454354 MYPNQ86TC9 1320 aa14.54□□□□□ -0.08
USP40-210ENST00000454354 A0A0G2JMZ2 1700 aa14.53□□□□□ -0.08
USP40-210ENST00000454354 TTC41PQ6P2S7 1318 aa14.53□□□□□ -0.08
USP40-210ENST00000454354 POTEFA5A3E0 1075 aa14.53□□□□□ -0.08
USP40-210ENST00000454354 CHGBP05060 677 aa14.53□□□□□ -0.08
USP40-210ENST00000454354 POLR3DP05423 398 aaPredicted RBP14.53□□□□□ -0.08
USP40-210ENST00000454354 CERKLQ49MI3 558 aaPredicted RBP14.53□□□□□ -0.08
USP40-210ENST00000454354 C12orf42Q96LP6 360 aa14.53□□□□□ -0.08
USP40-210ENST00000454354 CRBNQ96SW2 442 aa14.53□□□□□ -0.08
USP40-210ENST00000454354 TMOD4Q9NZQ9 345 aa14.53□□□□□ -0.08
USP40-210ENST00000454354 EVX2Q03828 476 aa14.52□□□□□ -0.09
USP40-210ENST00000454354 PRKCZQ05513 592 aa14.52□□□□□ -0.09
USP40-210ENST00000454354 ABCB5Q2M3G0 1257 aa14.52□□□□□ -0.09
USP40-210ENST00000454354 USP17L2Q6R6M4 530 aa14.52□□□□□ -0.09
USP40-210ENST00000454354 ANKRD13CQ8N6S4 541 aa14.52□□□□□ -0.09
USP40-210ENST00000454354 KBTBD3Q8NAB2 608 aa14.52□□□□□ -0.09
USP40-210ENST00000454354 RAET1EQ8TD07 263 aa14.52□□□□□ -0.09
USP40-210ENST00000454354 SH3TC2Q8TF17 1288 aa14.52□□□□□ -0.09
USP40-210ENST00000454354 MORF4L1Q9UBU8 362 aa14.52□□□□□ -0.09
USP40-210ENST00000454354 PRKAB2O43741 272 aa14.51□□□□□ -0.09
USP40-210ENST00000454354 ECM2O94769 699 aaPredicted RBP14.51□□□□□ -0.09
USP40-210ENST00000454354 GRK4P32298 578 aa14.51□□□□□ -0.09
USP40-210ENST00000454354 GUCY1A2P33402 732 aa14.51□□□□□ -0.09
USP40-210ENST00000454354 TSHZ3Q63HK5 1081 aa14.51□□□□□ -0.09
USP40-210ENST00000454354 PUS7LQ9H0K6 701 aaKnown RBP14.51□□□□□ -0.09
USP40-210ENST00000454354 CABP5Q9NP86 173 aa14.51□□□□□ -0.09
USP40-210ENST00000454354 EMILIN3Q9NT22 766 aa14.51□□□□□ -0.09
USP40-210ENST00000454354 SWAP70Q9UH65 585 aa14.51□□□□□ -0.09
USP40-210ENST00000454354 MYH4Q9Y623 1939 aa14.51□□□□□ -0.09
USP40-210ENST00000454354 SALL3Q9BXA9 1300 aa14.5□□□□□ -0.09
USP40-210ENST00000454354 TNPO2O14787 897 aaKnown RBP14.5□□□□□ -0.09
USP40-210ENST00000454354 CYP2D6P10635 497 aa14.5□□□□□ -0.09
USP40-210ENST00000454354 USP14P54578 494 aa14.5□□□□□ -0.09
USP40-210ENST00000454354 HERVK_113P62684 666 aa14.5□□□□□ -0.09
USP40-210ENST00000454354 IRX3P78415 501 aaPredicted RBP14.5□□□□□ -0.09
USP40-210ENST00000454354 HDAC1Q13547 482 aaPredicted RBP14.5□□□□□ -0.09
USP40-210ENST00000454354 IRF5Q13568 498 aa14.5□□□□□ -0.09
USP40-210ENST00000454354 AAMPQ13685 434 aa14.5□□□□□ -0.09
USP40-210ENST00000454354 RAB3GAP1Q15042 981 aa14.5□□□□□ -0.09
USP40-210ENST00000454354 SLAIN1Q8ND83 568 aa14.5□□□□□ -0.09
USP40-210ENST00000454354 PI4K2BQ8TCG2 481 aa14.5□□□□□ -0.09
USP40-210ENST00000454354 TMEM106CQ9BVX2 250 aa14.5□□□□□ -0.09
USP40-210ENST00000454354 KIAA1683Q9H0B3 1180 aa14.5□□□□□ -0.09
USP40-210ENST00000454354 GABRQQ9UN88 632 aa14.5□□□□□ -0.09
USP40-210ENST00000454354 CEP290O15078 2479 aa14.49□□□□□ -0.09
USP40-210ENST00000454354 ERC2O15083 957 aa14.49□□□□□ -0.09
USP40-210ENST00000454354 ZFYP08048 801 aaPredicted RBP14.49□□□□□ -0.09
USP40-210ENST00000454354 C12orf60Q5U649 245 aa14.49□□□□□ -0.09
USP40-210ENST00000454354 POTEDQ86YR6 584 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms