RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TNNQ9UQP3 1299 aa8.61□□□□□ -1.03
VPS41-208ENST00000448833 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.61□□□□□ -1.03
VPS41-208ENST00000448833 FLT1P17948 1338 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 USP17L10C9JJH3 530 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 RAB11FIP3O75154 756 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 IDH1O75874 414 aaKnown RBP8.6□□□□□ -1.03
VPS41-208ENST00000448833 CCL5P13501 91 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 HOXA7P31268 230 aaPredicted RBP8.6□□□□□ -1.03
VPS41-208ENST00000448833 FLT3LGP49771 235 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 BACE1P56817 501 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 IRX3P78415 501 aaPredicted RBP8.6□□□□□ -1.03
VPS41-208ENST00000448833 PRKCZQ05513 592 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 CEP85Q6P2H3 762 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 MAPKAPK5Q8IW41 473 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 CCAR1Q8IX12 1150 aaKnown RBP8.6□□□□□ -1.03
VPS41-208ENST00000448833 ANKRD13CQ8N6S4 541 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 EAF2Q96CJ1 260 aaPredicted RBP8.6□□□□□ -1.03
VPS41-208ENST00000448833 KIF1BPQ96EK5 621 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 CCDC8Q9H0W5 538 aaPredicted RBP8.6□□□□□ -1.03
VPS41-208ENST00000448833 C1orf115Q9H7X2 142 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 DBNLQ9UJU6 430 aaKnown RBP8.6□□□□□ -1.03
VPS41-208ENST00000448833 MYH8P13535 1937 aa8.6□□□□□ -1.03
VPS41-208ENST00000448833 SGPL1O95470 568 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 MYCP01106 439 aaPredicted RBP8.59□□□□□ -1.03
VPS41-208ENST00000448833 IFIT2P09913 472 aaKnown RBP8.59□□□□□ -1.03
VPS41-208ENST00000448833 RLBP1P12271 317 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 CTGFP29279 349 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 USP14P54578 494 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 HMGCS2P54868 508 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 AACSQ86V21 672 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 TRMT44Q8IYL2 757 aaKnown RBP8.59□□□□□ -1.03
VPS41-208ENST00000448833 MAGEB6Q8N7X4 407 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.59□□□□□ -1.03
VPS41-208ENST00000448833 DPF3Q92784 378 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 ASCC2Q9H1I8 757 aaPredicted RBP8.59□□□□□ -1.03
VPS41-208ENST00000448833 EHD4Q9H223 541 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 CABP5Q9NP86 173 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 SERPINB13Q9UIV8 391 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 PALD1Q9ULE6 856 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 NR2E3Q9Y5X4 410 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 SIPA1L1O43166 1804 aa8.59□□□□□ -1.03
VPS41-208ENST00000448833 FAM196BA6NMK8 535 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 GLRX3O76003 335 aaKnown RBP8.58□□□□□ -1.04
VPS41-208ENST00000448833 ECM2O94769 699 aaPredicted RBP8.58□□□□□ -1.04
VPS41-208ENST00000448833 TFRCP02786 760 aaKnown RBP8.58□□□□□ -1.04
VPS41-208ENST00000448833 MAPK4P31152 587 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 MTMR2Q13614 643 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 MTFR1Q15390 333 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 TREML2Q5T2D2 321 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 TATDN1Q6P1N9 297 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 USP17L2Q6R6M4 530 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 GPRC5AQ8NFJ5 357 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 RHPN1Q8TCX5 695 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 CRNKL1Q9BZJ0 848 aaKnown RBP8.58□□□□□ -1.04
VPS41-208ENST00000448833 PIH1D3Q9NQM4 214 aaKnown RBP8.58□□□□□ -1.04
VPS41-208ENST00000448833 MORF4L1Q9UBU8 362 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 ZBTB21Q9ULJ3 1066 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 GABRQQ9UN88 632 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 EXOC6BQ9Y2D4 811 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 MYH7P12883 1935 aa8.58□□□□□ -1.04
VPS41-208ENST00000448833 MAGEB6P1A0A0J9YX57 407 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 HMGCRP04035 888 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 INHAP05111 366 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 POLR3DP05423 398 aaPredicted RBP8.57□□□□□ -1.04
VPS41-208ENST00000448833 XRCC5P13010 732 aaKnown RBP8.57□□□□□ -1.04
VPS41-208ENST00000448833 CCNA1P78396 465 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 PDE3AQ14432 1141 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 CERKLQ49MI3 558 aaPredicted RBP8.57□□□□□ -1.04
VPS41-208ENST00000448833 HABP4Q5JVS0 413 aaKnown RBP8.57□□□□□ -1.04
VPS41-208ENST00000448833 SLC9C2Q5TAH2 1124 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 ADGRA1Q86SQ6 560 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 AMOTL1Q8IY63 956 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 ANKLE1Q8NAG6 615 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 PANK1Q8TE04 598 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 U2AF1L4Q8WU68 220 aaKnown RBP8.57□□□□□ -1.04
VPS41-208ENST00000448833 SOCS4Q8WXH5 440 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 DDRGK1Q96HY6 314 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 FEZ1Q99689 392 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 NUDT12Q9BQG2 462 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.57□□□□□ -1.04
VPS41-208ENST00000448833 HMX1Q9NP08 348 aaPredicted RBP8.57□□□□□ -1.04
VPS41-208ENST00000448833 ZBTB40Q9NUA8 1239 aa8.57□□□□□ -1.04
VPS41-208ENST00000448833 SAP30BPQ9UHR5 308 aaKnown RBP8.57□□□□□ -1.04
VPS41-208ENST00000448833 RPTORQ8N122 1335 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 USP17L15C9J2P7 530 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 USP17L13C9JLJ4 530 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 USP17L11C9JVI0 530 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 USP17L18D6R9N7 530 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 USP17L22D6RA61 530 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 USP17L17D6RBQ6 530 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 USP17L19D6RCP7 530 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 USP17L20D6RJB6 530 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 FARP2O94887 1054 aaPredicted RBP8.56□□□□□ -1.04
VPS41-208ENST00000448833 HERVK_113P62684 666 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 DYNLL1P63167 89 aaKnown RBP8.56□□□□□ -1.04
VPS41-208ENST00000448833 EVX2Q03828 476 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 USP17L24Q0WX57 530 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 ABCB5Q2M3G0 1257 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 ZSCAN25Q6NSZ9 544 aa8.56□□□□□ -1.04
VPS41-208ENST00000448833 CCDC84Q86UT8 332 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms