RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.71□□□□□ -0.052e-9■■■■□ 24.5
PTPRF-208ENST00000437607 FARP2O94887 1054 aaPredicted RBP14.7□□□□□ -0.06
PTPRF-208ENST00000437607 MCAMP43121 646 aa14.7□□□□□ -0.06
PTPRF-208ENST00000437607 SPATA5Q8NB90 893 aa14.7□□□□□ -0.06
PTPRF-208ENST00000437607 OTUD7AQ8TE49 926 aaPredicted RBP14.7□□□□□ -0.06
PTPRF-208ENST00000437607 SMCR8Q8TEV9 937 aaPredicted RBP14.7□□□□□ -0.06
PTPRF-208ENST00000437607 OSBPL5Q9H0X9 879 aaPredicted RBP14.7□□□□□ -0.06
PTPRF-208ENST00000437607 PAK6Q9NQU5 681 aaPredicted RBP14.7□□□□□ -0.06
PTPRF-208ENST00000437607 SPP2Q13103 211 aa14.69□□□□□ -0.06
PTPRF-208ENST00000437607 PLEKHM2Q8IWE5 1019 aa14.69□□□□□ -0.06
PTPRF-208ENST00000437607 PROCA1Q8NCQ7 364 aaPredicted RBP14.69□□□□□ -0.06
PTPRF-208ENST00000437607 HTATIP2Q9BUP3 242 aa14.69□□□□□ -0.06
PTPRF-208ENST00000437607 TTC41PQ6P2S7 1318 aa14.68□□□□□ -0.06
PTPRF-208ENST00000437607 SALL3Q9BXA9 1300 aa14.68□□□□□ -0.06
PTPRF-208ENST00000437607 MYH8P13535 1937 aa14.68□□□□□ -0.06
PTPRF-208ENST00000437607 ERC2O15083 957 aa14.68□□□□□ -0.06
PTPRF-208ENST00000437607 MAP4K4O95819 1239 aaPredicted RBP14.68□□□□□ -0.06
PTPRF-208ENST00000437607 LDHCP07864 332 aa14.68□□□□□ -0.06
PTPRF-208ENST00000437607 CAP2P40123 477 aa14.68□□□□□ -0.06
PTPRF-208ENST00000437607 PDE1AP54750 535 aa14.68□□□□□ -0.06
PTPRF-208ENST00000437607 GSTO1P78417 241 aa14.68□□□□□ -0.06
PTPRF-208ENST00000437607 FAM110CQ1W6H9 321 aa14.68□□□□□ -0.06
PTPRF-208ENST00000437607 ZNF280CQ8ND82 737 aa14.68□□□□□ -0.06
PTPRF-208ENST00000437607 SH3RF3Q8TEJ3 882 aaPredicted RBP14.68□□□□□ -0.06
PTPRF-208ENST00000437607 EAF2Q96CJ1 260 aaPredicted RBP14.68□□□□□ -0.06
PTPRF-208ENST00000437607 DEFB118Q96PH6 123 aa14.68□□□□□ -0.06
PTPRF-208ENST00000437607 CCDC8Q9H0W5 538 aaPredicted RBP14.68□□□□□ -0.06
PTPRF-208ENST00000437607 TLR7Q9NYK1 1049 aaKnown RBP14.68□□□□□ -0.06
PTPRF-208ENST00000437607 RAI14Q9P0K7 980 aa14.68□□□□□ -0.06
PTPRF-208ENST00000437607 LAMA2P24043 3122 aaKnown RBP14.68□□□□□ -0.06
PTPRF-208ENST00000437607 HMGCS2P54868 508 aa14.67□□□□□ -0.06
PTPRF-208ENST00000437607 JAG1P78504 1218 aa14.67□□□□□ -0.06
PTPRF-208ENST00000437607 SH3D19Q5HYK7 790 aa14.67□□□□□ -0.06
PTPRF-208ENST00000437607 GORABQ5T7V8 394 aa14.67□□□□□ -0.06
PTPRF-208ENST00000437607 TSHZ3Q63HK5 1081 aa14.67□□□□□ -0.06
PTPRF-208ENST00000437607 TEX11Q8IYF3 940 aa14.67□□□□□ -0.06
PTPRF-208ENST00000437607 DBNDD2Q9BQY9 259 aa14.67□□□□□ -0.06
PTPRF-208ENST00000437607 CRISPLD2Q9H0B8 497 aa14.67□□□□□ -0.06
PTPRF-208ENST00000437607 ECHDC1Q9NTX5 307 aa14.67□□□□□ -0.06
PTPRF-208ENST00000437607 DBNLQ9UJU6 430 aaKnown RBP14.67□□□□□ -0.06
PTPRF-208ENST00000437607 PNMA3Q9UL41 463 aa14.67□□□□□ -0.06
PTPRF-208ENST00000437607 NAV1Q8NEY1 1877 aa14.66□□□□□ -0.06
PTPRF-208ENST00000437607 GLRX3O76003 335 aaKnown RBP14.66□□□□□ -0.06
PTPRF-208ENST00000437607 TFRCP02786 760 aaKnown RBP14.66□□□□□ -0.06
PTPRF-208ENST00000437607 TTC22Q5TAA0 569 aa14.66□□□□□ -0.06
PTPRF-208ENST00000437607 ADGRA1Q86SQ6 560 aa14.66□□□□□ -0.06
PTPRF-208ENST00000437607 COA7Q96BR5 231 aa14.66□□□□□ -0.06
PTPRF-208ENST00000437607 ASCC2Q9H1I8 757 aaPredicted RBP14.66□□□□□ -0.06
PTPRF-208ENST00000437607 OSBPL3Q9H4L5 887 aa14.66□□□□□ -0.06
PTPRF-208ENST00000437607 DNAJC18Q9H819 358 aa14.66□□□□□ -0.06
PTPRF-208ENST00000437607 STAP2Q9UGK3 403 aa14.66□□□□□ -0.06
PTPRF-208ENST00000437607 GJD2Q9UKL4 321 aa14.66□□□□□ -0.06
PTPRF-208ENST00000437607 TAOK2Q9UL54 1235 aa14.66□□□□□ -0.06
PTPRF-208ENST00000437607 USP17L5A8MUK1 530 aa14.65□□□□□ -0.06
PTPRF-208ENST00000437607 PEX10O60683 326 aa14.65□□□□□ -0.06
PTPRF-208ENST00000437607 TRIM32Q13049 653 aa14.65□□□□□ -0.06
PTPRF-208ENST00000437607 SHROOM1Q2M3G4 852 aaPredicted RBP14.65□□□□□ -0.06
PTPRF-208ENST00000437607 BMP2KLQ5H9B9 411 aa14.65□□□□□ -0.06
PTPRF-208ENST00000437607 TTC39AQ5SRH9 613 aa14.65□□□□□ -0.06
PTPRF-208ENST00000437607 DIS3LQ8TF46 1054 aaKnown RBP14.65□□□□□ -0.06
PTPRF-208ENST00000437607 PAWRQ96IZ0 340 aaKnown RBP14.65□□□□□ -0.06
PTPRF-208ENST00000437607 TBC1D2Q9BYX2 928 aa14.65□□□□□ -0.06
PTPRF-208ENST00000437607 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.65□□□□□ -0.066e-6■■■□□ 16.8
PTPRF-208ENST00000437607 SNRKQ9NRH2 765 aa14.65□□□□□ -0.06
PTPRF-208ENST00000437607 HERC5Q9UII4 1024 aaKnown RBP14.65□□□□□ -0.06
PTPRF-208ENST00000437607 NR2E3Q9Y5X4 410 aa14.65□□□□□ -0.06
PTPRF-208ENST00000437607 A0A0C4DFX4 3053 aa14.64□□□□□ -0.07
PTPRF-208ENST00000437607 ZNFX1Q9P2E3 1918 aaKnown RBP14.64□□□□□ -0.07
PTPRF-208ENST00000437607 UQCRFS1P1P0C7P4 283 aa14.64□□□□□ -0.07
PTPRF-208ENST00000437607 GCLCP48506 637 aaPredicted RBP14.64□□□□□ -0.07
PTPRF-208ENST00000437607 CCDC158Q5M9N0 1113 aa14.64□□□□□ -0.07
PTPRF-208ENST00000437607 METTL16Q86W50 562 aaKnown RBP14.64□□□□□ -0.07
PTPRF-208ENST00000437607 WDR18Q9BV38 432 aa14.64□□□□□ -0.07
PTPRF-208ENST00000437607 AATFQ9NY61 560 aaKnown RBP eCLIP14.64□□□□□ -0.07
PTPRF-208ENST00000437607 LRP2BPQ9P2M1 347 aa14.64□□□□□ -0.07
PTPRF-208ENST00000437607 MORF4L1Q9UBU8 362 aa14.64□□□□□ -0.07
PTPRF-208ENST00000437607 PARP14Q460N5 1801 aa14.64□□□□□ -0.07
PTPRF-208ENST00000437607 RLFQ13129 1914 aa14.63□□□□□ -0.07
PTPRF-208ENST00000437607 EVI5O60447 810 aa14.63□□□□□ -0.07
PTPRF-208ENST00000437607 CYP2E1P05181 493 aaPredicted RBP14.63□□□□□ -0.07
PTPRF-208ENST00000437607 GSPT1P15170 499 aaKnown RBP14.63□□□□□ -0.07
PTPRF-208ENST00000437607 MNX1P50219 401 aaPredicted RBP14.63□□□□□ -0.07
PTPRF-208ENST00000437607 PPP4CP60510 307 aa14.63□□□□□ -0.07
PTPRF-208ENST00000437607 PABPC4Q13310 644 aaKnown RBP eCLIP14.63□□□□□ -0.07
PTPRF-208ENST00000437607 MTMR2Q13614 643 aa14.63□□□□□ -0.07
PTPRF-208ENST00000437607 NAA16Q6N069 864 aaPredicted RBP14.63□□□□□ -0.07
PTPRF-208ENST00000437607 PI4K2BQ8TCG2 481 aa14.63□□□□□ -0.07
PTPRF-208ENST00000437607 TGFBRAP1Q8WUH2 860 aa14.63□□□□□ -0.07
PTPRF-208ENST00000437607 PI4KBQ9UBF8 816 aa14.63□□□□□ -0.07
PTPRF-208ENST00000437607 FLT1P17948 1338 aa14.63□□□□□ -0.07
PTPRF-208ENST00000437607 SOX1O00570 391 aaPredicted RBP14.62□□□□□ -0.07
PTPRF-208ENST00000437607 HMGCRP04035 888 aa14.62□□□□□ -0.07
PTPRF-208ENST00000437607 CAPN2P17655 700 aa14.62□□□□□ -0.07
PTPRF-208ENST00000437607 BACE1P56817 501 aa14.62□□□□□ -0.07
PTPRF-208ENST00000437607 MAPKAPK5Q8IW41 473 aa14.62□□□□□ -0.07
PTPRF-208ENST00000437607 TRIB2Q92519 343 aa14.62□□□□□ -0.07
PTPRF-208ENST00000437607 AS3MTQ9HBK9 375 aa14.62□□□□□ -0.07
PTPRF-208ENST00000437607 TXNRD2Q9NNW7 524 aa14.62□□□□□ -0.07
PTPRF-208ENST00000437607 MYH7P12883 1935 aa14.61□□□□□ -0.07
PTPRF-208ENST00000437607 BAZ2AQ9UIF9 1905 aaKnown RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms