RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 MYH1P12882 1939 aa24.6■■□□□ 1.53
PTPRF-207ENST00000436724 ZNF646O15015 1829 aaPredicted RBP24.59■■□□□ 1.53
PTPRF-207ENST00000436724 MBD3O95983 291 aa24.59■■□□□ 1.53
PTPRF-207ENST00000436724 CCDC93Q567U6 631 aa24.59■■□□□ 1.53
PTPRF-207ENST00000436724 APOBEC3HQ6NTF7 200 aaKnown RBP24.59■■□□□ 1.53
PTPRF-207ENST00000436724 ALG1Q9BT22 464 aa24.59■■□□□ 1.53
PTPRF-207ENST00000436724 USP40Q9NVE5 1235 aa24.59■■□□□ 1.53
PTPRF-207ENST00000436724 WDHD1O75717 1129 aaPredicted RBP24.59■■□□□ 1.53
PTPRF-207ENST00000436724 CRKP46108 304 aa24.59■■□□□ 1.53
PTPRF-207ENST00000436724 HHIPL2Q6UWX4 724 aa24.59■■□□□ 1.53
PTPRF-207ENST00000436724 ILDR1Q86SU0 546 aaPredicted RBP24.59■■□□□ 1.53
PTPRF-207ENST00000436724 SUPT20HQ8NEM7 779 aa24.59■■□□□ 1.53
PTPRF-207ENST00000436724 IL17RBQ9NRM6 502 aa24.59■■□□□ 1.53
PTPRF-207ENST00000436724 FOCADQ5VW36 1801 aa24.58■■□□□ 1.53
PTPRF-207ENST00000436724 KIF13BQ9NQT8 1826 aa24.58■■□□□ 1.53
PTPRF-207ENST00000436724 IFNAR1P17181 557 aa24.58■■□□□ 1.53
PTPRF-207ENST00000436724 RCSD1Q6JBY9 416 aa24.58■■□□□ 1.53
PTPRF-207ENST00000436724 CDC42EP5Q6NZY7 148 aa24.58■■□□□ 1.53
PTPRF-207ENST00000436724 ECM29Q5VYK3 1845 aa24.58■■□□□ 1.52
PTPRF-207ENST00000436724 GUCY1A2P33402 732 aa24.57■■□□□ 1.52
PTPRF-207ENST00000436724 TROAPQ12815 778 aa24.57■■□□□ 1.52
PTPRF-207ENST00000436724 CATIPQ7Z7H3 387 aa24.57■■□□□ 1.52
PTPRF-207ENST00000436724 FTOQ9C0B1 505 aaKnown RBP eCLIP24.57■■□□□ 1.52
PTPRF-207ENST00000436724 RASA1P20936 1047 aa24.57■■□□□ 1.52
PTPRF-207ENST00000436724 SSRP1Q08945 709 aaKnown RBP24.57■■□□□ 1.52
PTPRF-207ENST00000436724 MTFR1LQ9H019 292 aa24.57■■□□□ 1.52
PTPRF-207ENST00000436724 ZNF277Q9NRM2 450 aaPredicted RBP24.57■■□□□ 1.52
PTPRF-207ENST00000436724 PPP1R1BQ9UD71 204 aaPredicted RBP24.57■■□□□ 1.52
PTPRF-207ENST00000436724 FMNL1O95466 1100 aaPredicted RBP24.56■■□□□ 1.52
PTPRF-207ENST00000436724 CDK8P49336 464 aa24.56■■□□□ 1.52
PTPRF-207ENST00000436724 RCAN1P53805 252 aa24.56■■□□□ 1.52
PTPRF-207ENST00000436724 UBE2HP62256 183 aa24.56■■□□□ 1.52
PTPRF-207ENST00000436724 CEBPZQ03701 1054 aaKnown RBP24.56■■□□□ 1.52
PTPRF-207ENST00000436724 ZSCAN23Q3MJ62 389 aa24.56■■□□□ 1.52
PTPRF-207ENST00000436724 NBPF11Q86T75 865 aa24.56■■□□□ 1.52
PTPRF-207ENST00000436724 RTKN2Q8IZC4 609 aa24.56■■□□□ 1.52
PTPRF-207ENST00000436724 C16orf86Q6ZW13 317 aa24.56■■□□□ 1.52
PTPRF-207ENST00000436724 ZNF444Q8N0Y2 327 aaPredicted RBP24.56■■□□□ 1.52
PTPRF-207ENST00000436724 CCDC196A0A1B0GTZ2 297 aa24.55■■□□□ 1.52
PTPRF-207ENST00000436724 TSPY3P0CV98 308 aa24.55■■□□□ 1.52
PTPRF-207ENST00000436724 TSPY8P0CW00 308 aa24.55■■□□□ 1.52
PTPRF-207ENST00000436724 CRACR2BQ8N4Y2 399 aaPredicted RBP24.55■■□□□ 1.52
PTPRF-207ENST00000436724 SPATA32Q96LK8 384 aa24.55■■□□□ 1.52
PTPRF-207ENST00000436724 POLD1P28340 1107 aa24.54■■□□□ 1.52
PTPRF-207ENST00000436724 RBM5P52756 815 aaKnown RBP eCLIP24.54■■□□□ 1.52
PTPRF-207ENST00000436724 CACNB3P54284 484 aa24.54■■□□□ 1.52
PTPRF-207ENST00000436724 FKBP1AP62942 108 aaKnown RBP24.54■■□□□ 1.52
PTPRF-207ENST00000436724 NFIAQ12857 509 aa24.54■■□□□ 1.52
PTPRF-207ENST00000436724 CSPP1Q1MSJ5 1256 aa24.54■■□□□ 1.52
PTPRF-207ENST00000436724 LEO1Q8WVC0 666 aaPredicted RBP24.54■■□□□ 1.52
PTPRF-207ENST00000436724 KIF28PB7ZC32 967 aa24.54■■□□□ 1.52
PTPRF-207ENST00000436724 ZDHHC15Q96MV8 337 aa24.54■■□□□ 1.52
PTPRF-207ENST00000436724 PSMD1Q99460 953 aa24.54■■□□□ 1.52
PTPRF-207ENST00000436724 SCAND2PQ9GZW5 306 aaPredicted RBP24.54■■□□□ 1.52
PTPRF-207ENST00000436724 MYH15Q9Y2K3 1946 aa24.54■■□□□ 1.52
PTPRF-207ENST00000436724 COL4A5P29400 1685 aa24.54■■□□□ 1.52
PTPRF-207ENST00000436724 PLEKHA8P1O95397 391 aa24.53■■□□□ 1.52
PTPRF-207ENST00000436724 KRT40Q6A162 431 aa24.53■■□□□ 1.52
PTPRF-207ENST00000436724 PIM2Q9P1W9 311 aa24.53■■□□□ 1.52
PTPRF-207ENST00000436724 STK36Q9NRP7 1315 aa24.53■■□□□ 1.52
PTPRF-207ENST00000436724 TRIM22Q8IYM9 498 aa24.52■■□□□ 1.52
PTPRF-207ENST00000436724 KLHL34Q8N239 644 aa24.52■■□□□ 1.52
PTPRF-207ENST00000436724 LARGE2Q8N3Y3 721 aa24.52■■□□□ 1.52
PTPRF-207ENST00000436724 USP28Q96RU2 1077 aa24.52■■□□□ 1.52
PTPRF-207ENST00000436724 DDAH1O94760 285 aa24.52■■□□□ 1.52
PTPRF-207ENST00000436724 ELP1O95163 1332 aa24.52■■□□□ 1.52
PTPRF-207ENST00000436724 TGFB2P61812 414 aa24.52■■□□□ 1.52
PTPRF-207ENST00000436724 KIF23Q02241 960 aaPredicted RBP24.52■■□□□ 1.52
PTPRF-207ENST00000436724 hCG_1642624A0A1W2PR95 340 aa24.51■■□□□ 1.51
PTPRF-207ENST00000436724 PSDA5PKW4 1024 aaPredicted RBP24.51■■□□□ 1.51
PTPRF-207ENST00000436724 RAD17O75943 681 aa24.51■■□□□ 1.51
PTPRF-207ENST00000436724 GRIPAP1Q4V328 841 aa24.51■■□□□ 1.51
PTPRF-207ENST00000436724 ZFPM1Q8IX07 1006 aa24.51■■□□□ 1.51
PTPRF-207ENST00000436724 ZNF287Q9HBT7 754 aa24.51■■□□□ 1.51
PTPRF-207ENST00000436724 FUT2Q10981 343 aa24.5■■□□□ 1.51
PTPRF-207ENST00000436724 DGKHQ86XP1 1220 aa24.5■■□□□ 1.51
PTPRF-207ENST00000436724 OSBPL5Q9H0X9 879 aaPredicted RBP24.5■■□□□ 1.51
PTPRF-207ENST00000436724 KAT14Q9H8E8 782 aa24.5■■□□□ 1.51
PTPRF-207ENST00000436724 CFAP45Q9UL16 551 aa24.5■■□□□ 1.51
PTPRF-207ENST00000436724 STX8Q9UNK0 236 aa24.5■■□□□ 1.51
PTPRF-207ENST00000436724 CALM1P0DP23 149 aa24.5■■□□□ 1.51
PTPRF-207ENST00000436724 CALM2P0DP24 149 aa24.5■■□□□ 1.51
PTPRF-207ENST00000436724 CALM3P0DP25 149 aa24.5■■□□□ 1.51
PTPRF-207ENST00000436724 SLURP2P0DP57 97 aa24.5■■□□□ 1.51
PTPRF-207ENST00000436724 PPP2R5BQ15173 497 aa24.5■■□□□ 1.51
PTPRF-207ENST00000436724 MRIQ9BWK5 157 aa24.5■■□□□ 1.51
PTPRF-207ENST00000436724 TCP10Q12799 353 aa24.49■■□□□ 1.51
PTPRF-207ENST00000436724 PNMA1Q8ND90 353 aa24.49■■□□□ 1.51
PTPRF-207ENST00000436724 BAZ2BQ9UIF8 2168 aaKnown RBP24.49■■□□□ 1.51
PTPRF-207ENST00000436724 SYCE3A1L190 88 aa24.49■■□□□ 1.51
PTPRF-207ENST00000436724 DEXIO95424 95 aa24.49■■□□□ 1.51
PTPRF-207ENST00000436724 GABPAQ06546 454 aa24.49■■□□□ 1.51
PTPRF-207ENST00000436724 CTCFLQ8NI51 663 aaPredicted RBP24.49■■□□□ 1.51
PTPRF-207ENST00000436724 PGBD1Q96JS3 809 aa24.49■■□□□ 1.51
PTPRF-207ENST00000436724 TCP11L1Q9NUJ3 509 aa24.49■■□□□ 1.51
PTPRF-207ENST00000436724 RBM28Q9NW13 759 aaKnown RBP24.49■■□□□ 1.51
PTPRF-207ENST00000436724 SERPINA10Q9UK55 444 aa24.49■■□□□ 1.51
PTPRF-207ENST00000436724 HDLBPQ00341 1268 aaKnown RBP24.48■■□□□ 1.51
PTPRF-207ENST00000436724 TRIM29Q14134 588 aa24.48■■□□□ 1.51
PTPRF-207ENST00000436724 UPF1Q92900 1129 aaKnown RBP eCLIP24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms