RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 AKAP17AQ02040 695 aaKnown RBP12.91□□□□□ -0.34
USP4-205ENST00000431357 ERCC6LQ2NKX8 1250 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 TMEM139Q8IV31 216 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 SPATA20Q8TB22 786 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 ESR2Q92731 530 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 BAG1Q99933 345 aaPredicted RBP12.91□□□□□ -0.34
USP4-205ENST00000431357 TAOK2Q9UL54 1235 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 NFE2L3Q9Y4A8 694 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 BCORQ6W2J9 1755 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 UBE2Q2LH0YL09 131 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 FOXN1O15353 648 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 PLCD1P51178 756 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 EIF5P55010 431 aaKnown RBP12.91□□□□□ -0.34
USP4-205ENST00000431357 PPARAQ07869 468 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 SUSD4Q5VX71 490 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 CREBRFQ8IUR6 639 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 MNS1Q8NEH6 495 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 UBXN4Q92575 508 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 INTS13Q9NVM9 706 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 BTG4Q9NY30 223 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 AATFQ9NY61 560 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP4-205ENST00000431357 BCCIPQ9P287 314 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP4-205ENST00000431357 LRP2BPQ9P2M1 347 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 PPP2R2CQ9Y2T4 447 aa12.91□□□□□ -0.34
USP4-205ENST00000431357 EFCAB8A8MWE9 144 aa12.9□□□□□ -0.34
USP4-205ENST00000431357 EXOC5O00471 708 aa12.9□□□□□ -0.34
USP4-205ENST00000431357 ACTN4O43707 911 aaKnown RBP12.9□□□□□ -0.34
USP4-205ENST00000431357 SPECC1Q5M775 1068 aa12.9□□□□□ -0.34
USP4-205ENST00000431357 PCDHB6Q9Y5E3 794 aa12.9□□□□□ -0.34
USP4-205ENST00000431357 TRIM75PA6NK02 468 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 PCP11498 1178 aaKnown RBP12.89□□□□□ -0.35
USP4-205ENST00000431357 NUP133Q8WUM0 1156 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 CDC5LQ99459 802 aaKnown RBP12.89□□□□□ -0.35
USP4-205ENST00000431357 ZKSCAN3Q9BRR0 538 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 RBM28Q9NW13 759 aaKnown RBP12.89□□□□□ -0.35
USP4-205ENST00000431357 VWA3AA6NCI4 1184 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 URI1O94763 535 aaPredicted RBP12.89□□□□□ -0.35
USP4-205ENST00000431357 PRR29P0C7W0 189 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 BCAMP50895 628 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 GRIN1Q05586 938 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 FMR1Q06787 632 aaKnown RBP eCLIP12.89□□□□□ -0.35
USP4-205ENST00000431357 NR5A1Q13285 461 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 SEC23AQ15436 765 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 ARHGAP29Q52LW3 1261 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 PDILTQ8N807 584 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 TC2NQ8N9U0 490 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 FERMT2Q96AC1 680 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 ZFP91Q96JP5 570 aaPredicted RBP12.89□□□□□ -0.35
USP4-205ENST00000431357 CABP5Q9NP86 173 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 RAI14Q9P0K7 980 aa12.89□□□□□ -0.35
USP4-205ENST00000431357 PRPF3O43395 683 aaKnown RBP12.88□□□□□ -0.35
USP4-205ENST00000431357 ATP8B1O43520 1251 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 CALM1P0DP23 149 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 CALM2P0DP24 149 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 CALM3P0DP25 149 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 CYP7A1P22680 504 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 CASQ1P31415 396 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 KRT2P35908 639 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 NR1I3Q14994 352 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 ZNF771Q7L3S4 317 aaPredicted RBP12.88□□□□□ -0.35
USP4-205ENST00000431357 SYTL4Q96C24 671 aaPredicted RBP12.88□□□□□ -0.35
USP4-205ENST00000431357 CSRNP2Q9H175 543 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 BRMS1Q9HCU9 246 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 SEC31BQ9NQW1 1179 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 GNL3LQ9NVN8 582 aaKnown RBP12.88□□□□□ -0.35
USP4-205ENST00000431357 PARP3Q9Y6F1 533 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 TNKSO95271 1327 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 NHSL1Q5SYE7 1610 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 PLCH1Q4KWH8 1693 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 SLIT2O94813 1529 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 MAGEB6P1A0A0J9YX57 407 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 A0A1B0GTH6 734 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 SEMA3EO15041 775 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 TADA3O75528 432 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 SLFN14P0C7P3 912 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 HSPA2P54652 639 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 SPATA1Q5VX52 437 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 PANX2Q96RD6 677 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 CTAGE1Q96RT6 745 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 PHF20Q9BVI0 1012 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 NAA15Q9BXJ9 866 aaKnown RBP12.88□□□□□ -0.35
USP4-205ENST00000431357 CCDC87Q9NVE4 849 aa12.88□□□□□ -0.35
USP4-205ENST00000431357 NPHP1O15259 732 aa12.87□□□□□ -0.35
USP4-205ENST00000431357 CLCN6P51797 869 aa12.87□□□□□ -0.35
USP4-205ENST00000431357 TERF2Q15554 542 aa12.87□□□□□ -0.35
USP4-205ENST00000431357 TMCO3Q6UWJ1 677 aa12.87□□□□□ -0.35
USP4-205ENST00000431357 SH3RF1Q7Z6J0 888 aa12.87□□□□□ -0.35
USP4-205ENST00000431357 CATIPQ7Z7H3 387 aa12.87□□□□□ -0.35
USP4-205ENST00000431357 CCDC82Q8N4S0 544 aa12.87□□□□□ -0.35
USP4-205ENST00000431357 MIGA1Q8NAN2 632 aa12.87□□□□□ -0.35
USP4-205ENST00000431357 OXER1Q8TDS5 423 aa12.87□□□□□ -0.35
USP4-205ENST00000431357 PYM1Q9BRP8 204 aaKnown RBP12.87□□□□□ -0.35
USP4-205ENST00000431357 ZNF446Q9NWS9 450 aa12.87□□□□□ -0.35
USP4-205ENST00000431357 AKR1B15C9JRZ8 316 aaPredicted RBP12.86□□□□□ -0.35
USP4-205ENST00000431357 MAP3K9P80192 1104 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 CHRNDQ07001 517 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 INTS5Q6P9B9 1019 aaKnown RBP12.86□□□□□ -0.35
USP4-205ENST00000431357 GSDMAQ96QA5 445 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 ZSCAN10Q96SZ4 725 aaPredicted RBP12.86□□□□□ -0.35
USP4-205ENST00000431357 BRIP1Q9BX63 1249 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms