RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 EAF2Q96CJ1 260 aaPredicted RBP17.71■□□□□ 0.43
SDC1-204ENST00000429035 NOP58Q9Y2X3 529 aaKnown RBP17.71■□□□□ 0.43
SDC1-204ENST00000429035 PLXNB2O15031 1838 aa17.7■□□□□ 0.42
SDC1-204ENST00000429035 ZBTB7BO15156 539 aaPredicted RBP17.7■□□□□ 0.42
SDC1-204ENST00000429035 TFRCP02786 760 aaKnown RBP17.7■□□□□ 0.42
SDC1-204ENST00000429035 PPP4CP60510 307 aa17.7■□□□□ 0.42
SDC1-204ENST00000429035 DIEXFQ68CQ4 756 aaKnown RBP17.7■□□□□ 0.42
SDC1-204ENST00000429035 PANK1Q8TE04 598 aa17.7■□□□□ 0.42
SDC1-204ENST00000429035 PXYLP1Q8TE99 480 aa17.7■□□□□ 0.42
SDC1-204ENST00000429035 ZNF512BQ96KM6 892 aaPredicted RBP17.7■□□□□ 0.42
SDC1-204ENST00000429035 DEFB118Q96PH6 123 aa17.7■□□□□ 0.42
SDC1-204ENST00000429035 ZBTB21Q9ULJ3 1066 aa17.7■□□□□ 0.42
SDC1-204ENST00000429035 TRIOBPQ9H2D6 2365 aa17.7■□□□□ 0.42
SDC1-204ENST00000429035 MYH8P13535 1937 aa17.69■□□□□ 0.42
SDC1-204ENST00000429035 ALPK3Q96L96 1907 aa17.69■□□□□ 0.42
SDC1-204ENST00000429035 APBB1O00213 710 aa17.69■□□□□ 0.42
SDC1-204ENST00000429035 BACE1P56817 501 aa17.69■□□□□ 0.42
SDC1-204ENST00000429035 ZYXQ15942 572 aaKnown RBP17.69■□□□□ 0.42
SDC1-204ENST00000429035 SH3D19Q5HYK7 790 aa17.69■□□□□ 0.42
SDC1-204ENST00000429035 FEZ1Q99689 392 aa17.69■□□□□ 0.42
SDC1-204ENST00000429035 IL1RAPL2Q9NP60 686 aa17.69■□□□□ 0.42
SDC1-204ENST00000429035 SGPL1O95470 568 aa17.68■□□□□ 0.42
SDC1-204ENST00000429035 FXR1P51114 621 aaKnown RBP eCLIP17.68■□□□□ 0.42
SDC1-204ENST00000429035 JAG1P78504 1218 aa17.68■□□□□ 0.42
SDC1-204ENST00000429035 DDX60LQ5H9U9 1706 aaKnown RBP17.68■□□□□ 0.42
SDC1-204ENST00000429035 ERC1Q8IUD2 1116 aa17.68■□□□□ 0.42
SDC1-204ENST00000429035 FOXP4Q8IVH2 680 aaPredicted RBP17.68■□□□□ 0.42
SDC1-204ENST00000429035 WDR18Q9BV38 432 aa17.68■□□□□ 0.42
SDC1-204ENST00000429035 ANTXR1Q9H6X2 564 aa17.68■□□□□ 0.42
SDC1-204ENST00000429035 USP17L10C9JJH3 530 aa17.67■□□□□ 0.42
SDC1-204ENST00000429035 PEX10O60683 326 aa17.67■□□□□ 0.42
SDC1-204ENST00000429035 GH2P01242 217 aa17.67■□□□□ 0.42
SDC1-204ENST00000429035 HMGCRP04035 888 aa17.67■□□□□ 0.42
SDC1-204ENST00000429035 MAP3K12Q12852 859 aa17.67■□□□□ 0.42
SDC1-204ENST00000429035 PAGR1Q9BTK6 254 aa17.67■□□□□ 0.42
SDC1-204ENST00000429035 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.67■□□□□ 0.42
SDC1-204ENST00000429035 CWC22Q9HCG8 908 aaKnown RBP17.67■□□□□ 0.42
SDC1-204ENST00000429035 ZBED9Q6R2W3 1325 aa17.67■□□□□ 0.42
SDC1-204ENST00000429035 HERVK_113P62684 666 aa17.66■□□□□ 0.42
SDC1-204ENST00000429035 CCAR1Q8IX12 1150 aaKnown RBP17.66■□□□□ 0.42
SDC1-204ENST00000429035 NR2E3Q9Y5X4 410 aa17.66■□□□□ 0.42
SDC1-204ENST00000429035 C19orf81C9J6K1 198 aa17.65■□□□□ 0.42
SDC1-204ENST00000429035 CYP2B6P20813 491 aa17.65■□□□□ 0.42
SDC1-204ENST00000429035 TRIM32Q13049 653 aa17.65■□□□□ 0.42
SDC1-204ENST00000429035 RAB3GAP1Q15042 981 aa17.65■□□□□ 0.42
SDC1-204ENST00000429035 UBE2Q1Q7Z7E8 422 aa17.65■□□□□ 0.42
SDC1-204ENST00000429035 DNAJC2Q99543 621 aaKnown RBP17.65■□□□□ 0.42
SDC1-204ENST00000429035 P2RX7Q99572 595 aaKnown RBP17.65■□□□□ 0.42
SDC1-204ENST00000429035 IGSF3O75054 1194 aa17.64■□□□□ 0.41
SDC1-204ENST00000429035 PDE3AQ14432 1141 aa17.64■□□□□ 0.41
SDC1-204ENST00000429035 HSP90AB4PQ58FF6 505 aa17.64■□□□□ 0.41
SDC1-204ENST00000429035 USP17L2Q6R6M4 530 aa17.64■□□□□ 0.41
SDC1-204ENST00000429035 METTL16Q86W50 562 aaKnown RBP17.64■□□□□ 0.41
SDC1-204ENST00000429035 CERS3Q8IU89 383 aa17.64■□□□□ 0.41
SDC1-204ENST00000429035 GPRC5AQ8NFJ5 357 aa17.64■□□□□ 0.41
SDC1-204ENST00000429035 TXNRD2Q9NNW7 524 aa17.64■□□□□ 0.41
SDC1-204ENST00000429035 PAK6Q9NQU5 681 aaPredicted RBP17.64■□□□□ 0.41
SDC1-204ENST00000429035 GINM1Q9NU53 330 aa17.64■□□□□ 0.41
SDC1-204ENST00000429035 MORF4L1Q9UBU8 362 aa17.64■□□□□ 0.41
SDC1-204ENST00000429035 SERPINB13Q9UIV8 391 aa17.64■□□□□ 0.41
SDC1-204ENST00000429035 MYH7P12883 1935 aa17.64■□□□□ 0.41
SDC1-204ENST00000429035 EVI5O60447 810 aa17.63■□□□□ 0.41
SDC1-204ENST00000429035 POLR3DP05423 398 aaPredicted RBP17.63■□□□□ 0.41
SDC1-204ENST00000429035 WDR78Q5VTH9 848 aa17.63■□□□□ 0.41
SDC1-204ENST00000429035 RHPN1Q8TCX5 695 aa17.63■□□□□ 0.41
SDC1-204ENST00000429035 DIS3LQ8TF46 1054 aaKnown RBP17.63■□□□□ 0.41
SDC1-204ENST00000429035 SOCS4Q8WXH5 440 aa17.63■□□□□ 0.41
SDC1-204ENST00000429035 TRIB2Q92519 343 aa17.63■□□□□ 0.41
SDC1-204ENST00000429035 PAWRQ96IZ0 340 aaKnown RBP17.63■□□□□ 0.41
SDC1-204ENST00000429035 NUDT12Q9BQG2 462 aa17.63■□□□□ 0.41
SDC1-204ENST00000429035 HMX1Q9NP08 348 aaPredicted RBP17.63■□□□□ 0.41
SDC1-204ENST00000429035 RBM27Q9P2N5 1060 aaKnown RBP17.63■□□□□ 0.41
SDC1-204ENST00000429035 BAZ2AQ9UIF9 1905 aaKnown RBP17.62■□□□□ 0.41
SDC1-204ENST00000429035 MAGEB6P1A0A0J9YX57 407 aa17.62■□□□□ 0.41
SDC1-204ENST00000429035 HOXA7P31268 230 aaPredicted RBP17.62■□□□□ 0.41
SDC1-204ENST00000429035 ERVK-9P63128 1117 aa17.62■□□□□ 0.41
SDC1-204ENST00000429035 ERVK-24P63145 666 aa17.62■□□□□ 0.41
SDC1-204ENST00000429035 ABCB5Q2M3G0 1257 aa17.62■□□□□ 0.41
SDC1-204ENST00000429035 TTC6Q86TZ1 520 aa17.62■□□□□ 0.41
SDC1-204ENST00000429035 CLASRPQ8N2M8 674 aaKnown RBP17.62■□□□□ 0.41
SDC1-204ENST00000429035 FRMPD3Q5JV73 1810 aa17.61■□□□□ 0.41
SDC1-204ENST00000429035 GOLIM4O00461 696 aa17.61■□□□□ 0.41
SDC1-204ENST00000429035 IFIT2P09913 472 aaKnown RBP17.61■□□□□ 0.41
SDC1-204ENST00000429035 MS4A1P11836 297 aa17.61■□□□□ 0.41
SDC1-204ENST00000429035 ZKSCAN1P17029 563 aaPredicted RBP17.61■□□□□ 0.41
SDC1-204ENST00000429035 TTF1Q15361 905 aaPredicted RBP17.61■□□□□ 0.41
SDC1-204ENST00000429035 CERKLQ49MI3 558 aaPredicted RBP17.61■□□□□ 0.41
SDC1-204ENST00000429035 NECAB2Q7Z6G3 386 aa17.61■□□□□ 0.41
SDC1-204ENST00000429035 GTF3C2Q8WUA4 911 aaPredicted RBP17.61■□□□□ 0.41
SDC1-204ENST00000429035 CABP5Q9NP86 173 aa17.61■□□□□ 0.41
SDC1-204ENST00000429035 EMILIN3Q9NT22 766 aa17.61■□□□□ 0.41
SDC1-204ENST00000429035 GJD2Q9UKL4 321 aa17.61■□□□□ 0.41
SDC1-204ENST00000429035 COG6Q9Y2V7 657 aa17.61■□□□□ 0.41
SDC1-204ENST00000429035 RPTORQ8N122 1335 aa17.61■□□□□ 0.41
SDC1-204ENST00000429035 MPHOSPH10O00566 681 aaKnown RBP17.6■□□□□ 0.41
SDC1-204ENST00000429035 HMMRO75330 724 aa17.6■□□□□ 0.41
SDC1-204ENST00000429035 PRKAR2AP13861 404 aaKnown RBP17.6■□□□□ 0.41
SDC1-204ENST00000429035 PDE6AP16499 860 aa17.6■□□□□ 0.41
SDC1-204ENST00000429035 MAPK4P31152 587 aa17.6■□□□□ 0.41
SDC1-204ENST00000429035 SLC9C2Q5TAH2 1124 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms