RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 DDX19BQ9UMR2 479 aa20.8■□□□□ 0.92
TRIM39-209ENST00000428728 ADCY3O60266 1144 aa20.79■□□□□ 0.92
TRIM39-209ENST00000428728 ELNP15502 786 aa20.79■□□□□ 0.92
TRIM39-209ENST00000428728 SH3D19Q5HYK7 790 aa20.79■□□□□ 0.92
TRIM39-209ENST00000428728 METTL16Q86W50 562 aaKnown RBP20.79■□□□□ 0.92
TRIM39-209ENST00000428728 FOXP4Q8IVH2 680 aaPredicted RBP20.79■□□□□ 0.92
TRIM39-209ENST00000428728 RNF208Q9H0X6 261 aa20.79■□□□□ 0.92
TRIM39-209ENST00000428728 ASCC2Q9H1I8 757 aaPredicted RBP20.79■□□□□ 0.92
TRIM39-209ENST00000428728 HMMRO75330 724 aa20.78■□□□□ 0.92
TRIM39-209ENST00000428728 CLASRPQ8N2M8 674 aaKnown RBP20.78■□□□□ 0.92
TRIM39-209ENST00000428728 KIF1BPQ96EK5 621 aa20.78■□□□□ 0.92
TRIM39-209ENST00000428728 WDR18Q9BV38 432 aa20.78■□□□□ 0.92
TRIM39-209ENST00000428728 TMOD4Q9NZQ9 345 aa20.78■□□□□ 0.92
TRIM39-209ENST00000428728 GCLCP48506 637 aaPredicted RBP20.77■□□□□ 0.92
TRIM39-209ENST00000428728 BACE1P56817 501 aa20.77■□□□□ 0.92
TRIM39-209ENST00000428728 IRX3P78415 501 aaPredicted RBP20.77■□□□□ 0.92
TRIM39-209ENST00000428728 CERS3Q8IU89 383 aa20.77■□□□□ 0.92
TRIM39-209ENST00000428728 SIRT2Q8IXJ6 389 aa20.77■□□□□ 0.92
TRIM39-209ENST00000428728 RPAP2Q8IXW5 612 aaPredicted RBP20.77■□□□□ 0.92
TRIM39-209ENST00000428728 COA7Q96BR5 231 aa20.77■□□□□ 0.92
TRIM39-209ENST00000428728 GCC1Q96CN9 775 aa20.77■□□□□ 0.92
TRIM39-209ENST00000428728 DNAJC2Q99543 621 aaKnown RBP20.77■□□□□ 0.92
TRIM39-209ENST00000428728 UNC93B1Q9H1C4 597 aa20.77■□□□□ 0.92
TRIM39-209ENST00000428728 ZBTB40Q9NUA8 1239 aa20.77■□□□□ 0.92
TRIM39-209ENST00000428728 RCAN3Q9UKA8 241 aa20.77■□□□□ 0.92
TRIM39-209ENST00000428728 INHAP05111 366 aa20.76■□□□□ 0.91
TRIM39-209ENST00000428728 IFIT2P09913 472 aaKnown RBP20.76■□□□□ 0.91
TRIM39-209ENST00000428728 GH2P01242 217 aa20.75■□□□□ 0.91
TRIM39-209ENST00000428728 GJB1P08034 283 aa20.75■□□□□ 0.91
TRIM39-209ENST00000428728 GJA8P48165 433 aa20.75■□□□□ 0.91
TRIM39-209ENST00000428728 TTF1Q15361 905 aaPredicted RBP20.75■□□□□ 0.91
TRIM39-209ENST00000428728 NKX2-3Q8TAU0 364 aa20.75■□□□□ 0.91
TRIM39-209ENST00000428728 GINM1Q9NU53 330 aa20.75■□□□□ 0.91
TRIM39-209ENST00000428728 MAGEB6P1A0A0J9YX57 407 aa20.74■□□□□ 0.91
TRIM39-209ENST00000428728 USP17L10C9JJH3 530 aa20.74■□□□□ 0.91
TRIM39-209ENST00000428728 GOLIM4O00461 696 aa20.74■□□□□ 0.91
TRIM39-209ENST00000428728 PDE6AP16499 860 aa20.74■□□□□ 0.91
TRIM39-209ENST00000428728 IRF5Q13568 498 aa20.74■□□□□ 0.91
TRIM39-209ENST00000428728 RIOK1Q9BRS2 568 aaKnown RBP20.74■□□□□ 0.91
TRIM39-209ENST00000428728 SERPINB13Q9UIV8 391 aa20.74■□□□□ 0.91
TRIM39-209ENST00000428728 ALPK3Q96L96 1907 aa20.74■□□□□ 0.91
TRIM39-209ENST00000428728 C19orf81C9J6K1 198 aa20.73■□□□□ 0.91
TRIM39-209ENST00000428728 PEX10O60683 326 aa20.73■□□□□ 0.91
TRIM39-209ENST00000428728 ZYXQ15942 572 aaKnown RBP20.73■□□□□ 0.91
TRIM39-209ENST00000428728 SLC9C2Q5TAH2 1124 aa20.73■□□□□ 0.91
TRIM39-209ENST00000428728 PXYLP1Q8TE99 480 aa20.73■□□□□ 0.91
TRIM39-209ENST00000428728 U2AF1L4Q8WU68 220 aaKnown RBP20.73■□□□□ 0.91
TRIM39-209ENST00000428728 EDC3Q96F86 508 aaKnown RBP20.73■□□□□ 0.91
TRIM39-209ENST00000428728 EHD4Q9H223 541 aa20.73■□□□□ 0.91
TRIM39-209ENST00000428728 TMED8Q6PL24 325 aaPredicted RBP20.72■□□□□ 0.91
TRIM39-209ENST00000428728 TTC6Q86TZ1 520 aa20.72■□□□□ 0.91
TRIM39-209ENST00000428728 P2RX7Q99572 595 aaKnown RBP20.72■□□□□ 0.91
TRIM39-209ENST00000428728 FEZ1Q99689 392 aa20.72■□□□□ 0.91
TRIM39-209ENST00000428728 ZNF532Q9HCE3 1301 aa20.72■□□□□ 0.91
TRIM39-209ENST00000428728 RAB11FIP3O75154 756 aa20.71■□□□□ 0.91
TRIM39-209ENST00000428728 POLR3DP05423 398 aaPredicted RBP20.71■□□□□ 0.91
TRIM39-209ENST00000428728 HOXA7P31268 230 aaPredicted RBP20.71■□□□□ 0.91
TRIM39-209ENST00000428728 HERVK_113P62684 666 aa20.71■□□□□ 0.91
TRIM39-209ENST00000428728 RAB3GAP1Q15042 981 aa20.71■□□□□ 0.91
TRIM39-209ENST00000428728 C20orf194Q5TEA3 1177 aa20.71■□□□□ 0.91
TRIM39-209ENST00000428728 TATDN1Q6P1N9 297 aa20.71■□□□□ 0.91
TRIM39-209ENST00000428728 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.71■□□□□ 0.91
TRIM39-209ENST00000428728 CRNKL1Q9BZJ0 848 aaKnown RBP20.71■□□□□ 0.91
TRIM39-209ENST00000428728 CHMP4BQ9H444 224 aaKnown RBP20.71■□□□□ 0.91
TRIM39-209ENST00000428728 MORF4L1Q9UBU8 362 aa20.71■□□□□ 0.91
TRIM39-209ENST00000428728 FARP2O94887 1054 aaPredicted RBP20.7■□□□□ 0.9
TRIM39-209ENST00000428728 PLCD1P51178 756 aa20.7■□□□□ 0.9
TRIM39-209ENST00000428728 CERKLQ49MI3 558 aaPredicted RBP20.7■□□□□ 0.9
TRIM39-209ENST00000428728 HABP4Q5JVS0 413 aaKnown RBP20.7■□□□□ 0.9
TRIM39-209ENST00000428728 USP17L2Q6R6M4 530 aa20.7■□□□□ 0.9
TRIM39-209ENST00000428728 PAGR1Q9BTK6 254 aa20.7■□□□□ 0.9
TRIM39-209ENST00000428728 TXNRD2Q9NNW7 524 aa20.7■□□□□ 0.9
TRIM39-209ENST00000428728 EMILIN3Q9NT22 766 aa20.7■□□□□ 0.9
TRIM39-209ENST00000428728 FRMPD3Q5JV73 1810 aa20.69■□□□□ 0.9
TRIM39-209ENST00000428728 H0YGN5 161 aa20.69■□□□□ 0.9
TRIM39-209ENST00000428728 SHMT1P34896 483 aa20.69■□□□□ 0.9
TRIM39-209ENST00000428728 EVX2Q03828 476 aa20.69■□□□□ 0.9
TRIM39-209ENST00000428728 ABCB5Q2M3G0 1257 aa20.69■□□□□ 0.9
TRIM39-209ENST00000428728 LCORLQ8N3X6 602 aa20.69■□□□□ 0.9
TRIM39-209ENST00000428728 SDR42E1Q8WUS8 393 aa20.69■□□□□ 0.9
TRIM39-209ENST00000428728 DEFB118Q96PH6 123 aa20.69■□□□□ 0.9
TRIM39-209ENST00000428728 BOLA2Q9H3K6 86 aa20.69■□□□□ 0.9
TRIM39-209ENST00000428728 PAG1Q9NWQ8 432 aa20.69■□□□□ 0.9
TRIM39-209ENST00000428728 MCM9Q9NXL9 1143 aa20.69■□□□□ 0.9
TRIM39-209ENST00000428728 CEP290O15078 2479 aa20.68■□□□□ 0.9
TRIM39-209ENST00000428728 TCRBV5S4A2TA0A5A2 114 aa20.68■□□□□ 0.9
TRIM39-209ENST00000428728 SGPL1O95470 568 aa20.68■□□□□ 0.9
TRIM39-209ENST00000428728 HMGCRP04035 888 aa20.68■□□□□ 0.9
TRIM39-209ENST00000428728 UBE2Q1Q7Z7E8 422 aa20.68■□□□□ 0.9
TRIM39-209ENST00000428728 DPF3Q92784 378 aa20.68■□□□□ 0.9
TRIM39-209ENST00000428728 PARP14Q460N5 1801 aa20.67■□□□□ 0.9
TRIM39-209ENST00000428728 SLFNL1Q499Z3 407 aa20.67■□□□□ 0.9
TRIM39-209ENST00000428728 GPRC5AQ8NFJ5 357 aa20.67■□□□□ 0.9
TRIM39-209ENST00000428728 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.67■□□□□ 0.9
TRIM39-209ENST00000428728 ARMT1Q9H993 441 aa20.67■□□□□ 0.9
TRIM39-209ENST00000428728 CABP5Q9NP86 173 aa20.67■□□□□ 0.9
TRIM39-209ENST00000428728 PAK6Q9NQU5 681 aaPredicted RBP20.67■□□□□ 0.9
TRIM39-209ENST00000428728 GJD2Q9UKL4 321 aa20.67■□□□□ 0.9
TRIM39-209ENST00000428728 TFRCP02786 760 aaKnown RBP20.66■□□□□ 0.9
TRIM39-209ENST00000428728 CYP2B6P20813 491 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms