RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 UFL1O94874 794 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 TOB1P50616 345 aaPredicted RBP9.64□□□□□ -0.87
CD44-208ENST00000428726 ZNF75DP51815 510 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 EVCP57679 992 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 TRAPPC3LQ5T215 181 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 CNNM3Q8NE01 707 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 UBA5Q9GZZ9 404 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 COL22A1Q8NFW1 1626 aaPredicted RBP9.64□□□□□ -0.87
CD44-208ENST00000428726 MYH7P12883 1935 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 VWA3AA6NCI4 1184 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 PP2D1A8MPX8 630 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 TFAP4Q01664 338 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 PDE4BQ07343 736 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 ATL3Q6DD88 541 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 PIK3AP1Q6ZUJ8 805 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 FMR1NBQ8N0W7 255 aaPredicted RBP9.64□□□□□ -0.87
CD44-208ENST00000428726 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.64□□□□□ -0.87
CD44-208ENST00000428726 XPO4Q9C0E2 1151 aaKnown RBP9.64□□□□□ -0.87
CD44-208ENST00000428726 MKNK2Q9HBH9 465 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 SERTAD1Q9UHV2 236 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 ZNF804BA4D1E1 1349 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 ZMYM6O95789 1325 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 PES1O00541 588 aaKnown RBP9.64□□□□□ -0.87
CD44-208ENST00000428726 RIOK3O14730 519 aaKnown RBP9.64□□□□□ -0.87
CD44-208ENST00000428726 TCP10Q12799 353 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 TPD52L1Q16890 204 aaPredicted RBP9.64□□□□□ -0.87
CD44-208ENST00000428726 PARP10Q53GL7 1025 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 DHX40Q8IX18 779 aaKnown RBP9.64□□□□□ -0.87
CD44-208ENST00000428726 CNBD1Q8NA66 436 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 ENGASEQ8NFI3 743 aa9.64□□□□□ -0.87
CD44-208ENST00000428726 GNL3LQ9NVN8 582 aaKnown RBP9.64□□□□□ -0.87
CD44-208ENST00000428726 ROBO1Q9Y6N7 1651 aa9.63□□□□□ -0.87
CD44-208ENST00000428726 AXDND1Q5T1B0 1012 aaPredicted RBP9.63□□□□□ -0.87
CD44-208ENST00000428726 TRIM22Q8IYM9 498 aa9.63□□□□□ -0.87
CD44-208ENST00000428726 PCDHA5Q9Y5H7 936 aa9.63□□□□□ -0.87
CD44-208ENST00000428726 COL16A1Q07092 1604 aaPredicted RBP9.63□□□□□ -0.87
CD44-208ENST00000428726 COL1A1P02452 1464 aaPredicted RBP9.63□□□□□ -0.87
CD44-208ENST00000428726 WNK3Q9BYP7 1800 aa9.63□□□□□ -0.87
CD44-208ENST00000428726 AHDC1Q5TGY3 1603 aaPredicted RBP9.63□□□□□ -0.87
CD44-208ENST00000428726 SNAP25P60880 206 aa9.63□□□□□ -0.87
CD44-208ENST00000428726 GTF2IP78347 998 aa9.63□□□□□ -0.87
CD44-208ENST00000428726 SART3Q15020 963 aaKnown RBP9.63□□□□□ -0.87
CD44-208ENST00000428726 IQCB1Q15051 598 aa9.63□□□□□ -0.87
CD44-208ENST00000428726 RASSF8Q8NHQ8 419 aa9.63□□□□□ -0.87
CD44-208ENST00000428726 ZNF622Q969S3 477 aaKnown RBP eCLIP9.63□□□□□ -0.87
CD44-208ENST00000428726 NSUN4Q96CB9 384 aaKnown RBP9.63□□□□□ -0.87
CD44-208ENST00000428726 ZFP91Q96JP5 570 aaPredicted RBP9.63□□□□□ -0.87
CD44-208ENST00000428726 RIOK1Q9BRS2 568 aaKnown RBP9.63□□□□□ -0.87
CD44-208ENST00000428726 POLD4Q9HCU8 107 aa9.63□□□□□ -0.87
CD44-208ENST00000428726 NWD2Q9ULI1 1742 aa9.63□□□□□ -0.87
CD44-208ENST00000428726 AKAP11Q9UKA4 1901 aa9.63□□□□□ -0.87
CD44-208ENST00000428726 WDR19Q8NEZ3 1342 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 RBAK-RBAKDNI3L0D1 243 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 SERPINC1P01008 464 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 ADALQ6DHV7 355 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 TRMT1LQ7Z2T5 733 aaKnown RBP9.62□□□□□ -0.87
CD44-208ENST00000428726 RPGRQ92834 1020 aaKnown RBP9.62□□□□□ -0.87
CD44-208ENST00000428726 CSRNP2Q9H175 543 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 DCP1AQ9NPI6 582 aaPredicted RBP9.62□□□□□ -0.87
CD44-208ENST00000428726 FANCLQ9NW38 375 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 KIAA1468Q9P260 1216 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 THRAP3Q9Y2W1 955 aaKnown RBP9.62□□□□□ -0.87
CD44-208ENST00000428726 AFF2P51816 1311 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 FRMPD2Q68DX3 1309 aaPredicted RBP9.62□□□□□ -0.87
CD44-208ENST00000428726 CFAP100Q494V2 611 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 RBM43Q6ZSC3 357 aaKnown RBP9.62□□□□□ -0.87
CD44-208ENST00000428726 SRBD1Q8N5C6 995 aaKnown RBP9.62□□□□□ -0.87
CD44-208ENST00000428726 BSDC1Q9NW68 430 aaPredicted RBP9.62□□□□□ -0.87
CD44-208ENST00000428726 RTEL1Q9NZ71 1219 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 KCNH3Q9ULD8 1083 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 DOT1LQ8TEK3 1739 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 ATRNO75882 1429 aa9.62□□□□□ -0.87
CD44-208ENST00000428726 A0A087X0B3 334 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 SKILP12757 684 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 NLRP5P59047 1200 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 GPSM2P81274 684 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 SAFBQ15424 915 aaKnown RBP eCLIP9.61□□□□□ -0.87
CD44-208ENST00000428726 STX1AQ16623 288 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 USP17L2Q6R6M4 530 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 CRACR2BQ8N4Y2 399 aaPredicted RBP9.61□□□□□ -0.87
CD44-208ENST00000428726 ESR2Q92731 530 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 ZSCAN10Q96SZ4 725 aaPredicted RBP9.61□□□□□ -0.87
CD44-208ENST00000428726 QTRT2Q9H974 415 aaKnown RBP9.61□□□□□ -0.87
CD44-208ENST00000428726 BRCA2P51587 3418 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 MYH15Q9Y2K3 1946 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 DYNC1I1O14576 645 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 CDK11BP21127 795 aaKnown RBP9.61□□□□□ -0.87
CD44-208ENST00000428726 HEATR3Q7Z4Q2 680 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 CEP57L1Q8IYX8 460 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 A0A0U1RQG5 324 aaPredicted RBP9.61□□□□□ -0.87
CD44-208ENST00000428726 BMP6P22004 513 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 RBM5P52756 815 aaKnown RBP eCLIP9.61□□□□□ -0.87
CD44-208ENST00000428726 METTL16Q86W50 562 aaKnown RBP9.61□□□□□ -0.87
CD44-208ENST00000428726 IQCA1Q86XH1 822 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 NOSTRINQ8IVI9 506 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 SMARCC1Q92922 1105 aaPredicted RBP9.61□□□□□ -0.87
CD44-208ENST00000428726 PDGFDQ9GZP0 370 aaPredicted RBP9.61□□□□□ -0.87
CD44-208ENST00000428726 DBNDD1Q9H9R9 158 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 NARFQ9UHQ1 456 aa9.61□□□□□ -0.87
CD44-208ENST00000428726 LDHBP07195 334 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms