RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 EXOSC10Q01780 885 aaKnown RBP15.33■□□□□ 0.04
USP42-203ENST00000426246 SF3B3Q15393 1217 aaKnown RBP15.33■□□□□ 0.04
USP42-203ENST00000426246 PROM2Q8N271 834 aa15.33■□□□□ 0.04
USP42-203ENST00000426246 SMARCC2Q8TAQ2 1214 aa15.33■□□□□ 0.04
USP42-203ENST00000426246 CCDC12Q8WUD4 166 aaPredicted RBP15.33■□□□□ 0.04
USP42-203ENST00000426246 GDAP1L1Q96MZ0 367 aa15.33■□□□□ 0.04
USP42-203ENST00000426246 MROH7-TTC4A0A0A0MT08 1334 aa15.33■□□□□ 0.04
USP42-203ENST00000426246 LLPHQ9BRT6 129 aaKnown RBP15.32■□□□□ 0.04
USP42-203ENST00000426246 ZSWIM5Q9P217 1185 aa15.32■□□□□ 0.04
USP42-203ENST00000426246 PDE6AP16499 860 aa15.32■□□□□ 0.04
USP42-203ENST00000426246 CYP7A1P22680 504 aa15.32■□□□□ 0.04
USP42-203ENST00000426246 CCDC152Q4G0S7 254 aa15.32■□□□□ 0.04
USP42-203ENST00000426246 PPP1R13BQ96KQ4 1090 aa15.32■□□□□ 0.04
USP42-203ENST00000426246 MCM6Q14566 821 aa15.32■□□□□ 0.04
USP42-203ENST00000426246 WTAPQ15007 396 aa15.32■□□□□ 0.04
USP42-203ENST00000426246 SART3Q15020 963 aaKnown RBP15.32■□□□□ 0.04
USP42-203ENST00000426246 APOA5Q6Q788 366 aa15.32■□□□□ 0.04
USP42-203ENST00000426246 OXER1Q8TDS5 423 aa15.32■□□□□ 0.04
USP42-203ENST00000426246 ZNF274Q96GC6 653 aaPredicted RBP15.32■□□□□ 0.04
USP42-203ENST00000426246 SAMSN1Q9NSI8 373 aaKnown RBP15.32■□□□□ 0.04
USP42-203ENST00000426246 NEDD4P46934 1319 aa15.31■□□□□ 0.04
USP42-203ENST00000426246 TNS1Q9HBL0 1735 aaKnown RBP15.31■□□□□ 0.04
USP42-203ENST00000426246 CCZ1BP86790 482 aa15.31■□□□□ 0.04
USP42-203ENST00000426246 CCZ1P86791 482 aaPredicted RBP15.31■□□□□ 0.04
USP42-203ENST00000426246 MAP3K12Q12852 859 aa15.31■□□□□ 0.04
USP42-203ENST00000426246 LAMA4Q16363 1823 aa15.31■□□□□ 0.04
USP42-203ENST00000426246 TFRCP02786 760 aaKnown RBP15.31■□□□□ 0.04
USP42-203ENST00000426246 VWA3AA6NCI4 1184 aa15.31■□□□□ 0.04
USP42-203ENST00000426246 GYG1P46976 350 aa15.31■□□□□ 0.04
USP42-203ENST00000426246 RTN1Q16799 776 aa15.31■□□□□ 0.04
USP42-203ENST00000426246 E4F1Q66K89 784 aaPredicted RBP15.31■□□□□ 0.04
USP42-203ENST00000426246 V9GY48 417 aaPredicted RBP15.31■□□□□ 0.04
USP42-203ENST00000426246 TRIM37O94972 964 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 PRR29P0C7W0 189 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 MYL5Q02045 173 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 MTF1Q14872 753 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 RTEL1Q9NZ71 1219 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 PCDHB6Q9Y5E3 794 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 ARID4AP29374 1257 aaPredicted RBP15.3■□□□□ 0.04
USP42-203ENST00000426246 GSDMDP57764 484 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 NLRP12P59046 1061 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 FAM193AP78312 1265 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 PUM3Q15397 648 aaKnown RBP15.3■□□□□ 0.04
USP42-203ENST00000426246 FAM47AQ5JRC9 791 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 SMARCE1Q969G3 411 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 MRFAP1L1Q96HT8 127 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 RHOXF2BP0C7M4 288 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 SHC4Q6S5L8 630 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 TMCO3Q6UWJ1 677 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 RHOXF2Q9BQY4 288 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 VPS16Q9H269 839 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 HPS5Q9UPZ3 1129 aa15.3■□□□□ 0.04
USP42-203ENST00000426246 CDKL5O76039 1030 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 SLC27A3Q5K4L6 730 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.29■□□□□ 0.04
USP42-203ENST00000426246 KRT222Q8N1A0 295 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 EPSTI1Q96J88 318 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 VAT1LQ9HCJ6 419 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 FOXP2O15409 715 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 RBM6P78332 1123 aaKnown RBP15.29■□□□□ 0.04
USP42-203ENST00000426246 PDE4BQ07343 736 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 ENOX2Q16206 610 aaKnown RBP15.29■□□□□ 0.04
USP42-203ENST00000426246 PPFIBP1Q86W92 1011 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 ENGASEQ8NFI3 743 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 LPIN2Q92539 896 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 NACAP1Q9BZK3 213 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 ZPR1O75312 459 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 TM4SF1P30408 202 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 MCM7P33993 719 aa15.29■□□□□ 0.04
USP42-203ENST00000426246 PDE4CQ08493 712 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 TSGA10IPQ3SY00 556 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 SAMD1Q6SPF0 538 aaPredicted RBP15.28■□□□□ 0.04
USP42-203ENST00000426246 LCORLQ8N3X6 602 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 SETDB2Q96T68 719 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 PLEKHA4Q9H4M7 779 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 TFCP2L1Q9NZI6 479 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 CASQ1P31415 396 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 EVCP57679 992 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 KIF4BQ2VIQ3 1234 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 TRAPPC3LQ5T215 181 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 NBPF11Q86T75 865 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 ADRA2BP18089 450 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 ZNF772Q68DY9 489 aaPredicted RBP15.28■□□□□ 0.04
USP42-203ENST00000426246 IFNL3Q8IZI9 196 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 ZNF397Q8NF99 534 aaPredicted RBP15.28■□□□□ 0.04
USP42-203ENST00000426246 RABEP2Q9H5N1 569 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 PODXL2Q9NZ53 605 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 OGFRQ9NZT2 677 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 PRDM4Q9UKN5 801 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 RGPD3A6NKT7 1758 aaPredicted RBP15.28■□□□□ 0.04
USP42-203ENST00000426246 RGPD4Q7Z3J3 1758 aa15.28■□□□□ 0.04
USP42-203ENST00000426246 PDIA4P13667 645 aaKnown RBP15.27■□□□□ 0.04
USP42-203ENST00000426246 CHRNDQ07001 517 aa15.27■□□□□ 0.04
USP42-203ENST00000426246 DMTNQ08495 405 aa15.27■□□□□ 0.04
USP42-203ENST00000426246 NMT2O60551 498 aa15.27■□□□□ 0.03
USP42-203ENST00000426246 ZFYP08048 801 aaPredicted RBP15.27■□□□□ 0.03
USP42-203ENST00000426246 MB21D2Q8IYB1 491 aaPredicted RBP15.27■□□□□ 0.03
USP42-203ENST00000426246 VGLL3A8MV65 326 aa15.26■□□□□ 0.03
USP42-203ENST00000426246 DYNLL1P63167 89 aaKnown RBP15.26■□□□□ 0.03
USP42-203ENST00000426246 NOM1Q5C9Z4 860 aaKnown RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms