RNA–Protein interactions for RNA: ENST00000425072.5

MDC1-205, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-205ENST00000425072 RASA3Q14644 834 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 WTAPQ15007 396 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 PPP2R5BQ15173 497 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 NFXL1Q6ZNB6 911 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 CYB5R4Q7L1T6 521 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 CHST3Q7LGC8 479 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 PNMA8AQ86V59 439 aaPredicted RBP12.13□□□□□ -0.47
MDC1-205ENST00000425072 DGKHQ86XP1 1220 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 NEDD1Q8NHV4 660 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 BRF1Q92994 677 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 DYNLL2Q96FJ2 89 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 INTS4Q96HW7 963 aaKnown RBP12.13□□□□□ -0.47
MDC1-205ENST00000425072 TMX3Q96JJ7 454 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 CSRNP1Q96S65 589 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 ZSCAN10Q96SZ4 725 aaPredicted RBP12.13□□□□□ -0.47
MDC1-205ENST00000425072 CWC22Q9HCG8 908 aaKnown RBP12.13□□□□□ -0.47
MDC1-205ENST00000425072 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.13□□□□□ -0.47
MDC1-205ENST00000425072 ATRNL1Q5VV63 1379 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 ROBO3Q96MS0 1386 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 LAMA4Q16363 1823 aa12.13□□□□□ -0.47
MDC1-205ENST00000425072 COL2A1P02458 1487 aaPredicted RBP12.13□□□□□ -0.47
MDC1-205ENST00000425072 NEDD4P46934 1319 aa12.12□□□□□ -0.47
MDC1-205ENST00000425072 CCDC69A6NI79 296 aa12.12□□□□□ -0.47
MDC1-205ENST00000425072 PRDM1O75626 825 aa12.12□□□□□ -0.47
MDC1-205ENST00000425072 TOB2Q14106 344 aaPredicted RBP12.12□□□□□ -0.47
MDC1-205ENST00000425072 SUPT20HL1Q3ZLR7 823 aa12.12□□□□□ -0.47
MDC1-205ENST00000425072 CERKLQ49MI3 558 aaPredicted RBP12.12□□□□□ -0.47
MDC1-205ENST00000425072 SGMS1Q86VZ5 419 aa12.12□□□□□ -0.47
MDC1-205ENST00000425072 ANKS1AQ92625 1134 aa12.12□□□□□ -0.47
MDC1-205ENST00000425072 DCPSQ96C86 337 aaKnown RBP12.12□□□□□ -0.47
MDC1-205ENST00000425072 TCEANC2Q96MN5 208 aa12.12□□□□□ -0.47
MDC1-205ENST00000425072 DEFB129Q9H1M3 183 aa12.12□□□□□ -0.47
MDC1-205ENST00000425072 SLKQ9H2G2 1235 aaPredicted RBP12.12□□□□□ -0.47
MDC1-205ENST00000425072 CABP5Q9NP86 173 aa12.12□□□□□ -0.47
MDC1-205ENST00000425072 PPP2R3BQ9Y5P8 575 aa12.12□□□□□ -0.47
MDC1-205ENST00000425072 NAV1Q8NEY1 1877 aa12.12□□□□□ -0.47
MDC1-205ENST00000425072 PITPNM2Q9BZ72 1349 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 SHTN1A0MZ66 631 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 SH2B2O14492 632 aaPredicted RBP12.11□□□□□ -0.47
MDC1-205ENST00000425072 CD2BP2O95400 341 aaKnown RBP12.11□□□□□ -0.47
MDC1-205ENST00000425072 CALM1P0DP23 149 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 CALM2P0DP24 149 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 CALM3P0DP25 149 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 PDIA4P13667 645 aaKnown RBP12.11□□□□□ -0.47
MDC1-205ENST00000425072 RASA1P20936 1047 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 ANTXR2P58335 489 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 MAP3K10Q02779 954 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 CUL4AQ13619 759 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 SLC4A8Q2Y0W8 1093 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 FAM47AQ5JRC9 791 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 IFIT1BQ5T764 474 aaKnown RBP12.11□□□□□ -0.47
MDC1-205ENST00000425072 TATDN1Q6P1N9 297 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 SH3BP5LQ7L8J4 393 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 LRRC2Q9BYS8 371 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.11□□□□□ -0.47
MDC1-205ENST00000425072 TPCN1Q9ULQ1 816 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 SLC12A7Q9Y666 1083 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 TACC3Q9Y6A5 838 aa12.11□□□□□ -0.47
MDC1-205ENST00000425072 CCDC196A0A1B0GTZ2 297 aa12.1□□□□□ -0.47
MDC1-205ENST00000425072 SMIM22K7EJ46 135 aa12.1□□□□□ -0.47
MDC1-205ENST00000425072 PFKFB2O60825 505 aa12.1□□□□□ -0.47
MDC1-205ENST00000425072 EGFRP00533 1210 aa12.1□□□□□ -0.47
MDC1-205ENST00000425072 PDIA3P30101 505 aaKnown RBP12.1□□□□□ -0.47
MDC1-205ENST00000425072 EPHX2P34913 555 aa12.1□□□□□ -0.47
MDC1-205ENST00000425072 RCAN1P53805 252 aa12.1□□□□□ -0.47
MDC1-205ENST00000425072 HIRAP54198 1017 aaPredicted RBP12.1□□□□□ -0.47
MDC1-205ENST00000425072 APOBRQ0VD83 1088 aa12.1□□□□□ -0.47
MDC1-205ENST00000425072 ANGEL2Q5VTE6 544 aaKnown RBP12.1□□□□□ -0.47
MDC1-205ENST00000425072 DCAF15Q66K64 600 aa12.1□□□□□ -0.47
MDC1-205ENST00000425072 CPLX2Q6PUV4 134 aaKnown RBP12.1□□□□□ -0.47
MDC1-205ENST00000425072 NOL8Q76FK4 1167 aaKnown RBP12.1□□□□□ -0.47
MDC1-205ENST00000425072 CATIPQ7Z7H3 387 aa12.1□□□□□ -0.47
MDC1-205ENST00000425072 TMEM39BQ9GZU3 492 aa12.1□□□□□ -0.47
MDC1-205ENST00000425072 GINM1Q9NU53 330 aa12.1□□□□□ -0.47
MDC1-205ENST00000425072 PGAP2Q9UHJ9 254 aa12.1□□□□□ -0.47
MDC1-205ENST00000425072 NAP1L2Q9ULW6 460 aaPredicted RBP12.1□□□□□ -0.47
MDC1-205ENST00000425072 CNTNAP1P78357 1384 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 POLR2AP24928 1970 aaKnown RBP12.09□□□□□ -0.47
MDC1-205ENST00000425072 KLF18A0A0U1RQI7 1052 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 ZBTB43O43298 467 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 VEGFAP15692 232 aaPredicted RBP12.09□□□□□ -0.47
MDC1-205ENST00000425072 SHMT1P34896 483 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 SLC4A3P48751 1232 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 APLP1P51693 650 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 SEC23AQ15436 765 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 ME3Q16798 604 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 SULF1Q8IWU6 871 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 ZKSCAN3Q9BRR0 538 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 LARP6Q9BRS8 491 aaKnown RBP12.09□□□□□ -0.47
MDC1-205ENST00000425072 LLPHQ9BRT6 129 aaKnown RBP12.09□□□□□ -0.47
MDC1-205ENST00000425072 KANSL2Q9H9L4 492 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 LY9Q9HBG7 655 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 GPBP1L1Q9HC44 474 aaPredicted RBP12.09□□□□□ -0.47
MDC1-205ENST00000425072 TNKSO95271 1327 aa12.09□□□□□ -0.47
MDC1-205ENST00000425072 LAMB1P07942 1786 aa12.08□□□□□ -0.48
MDC1-205ENST00000425072 ADAMTSL1Q8N6G6 1762 aa12.08□□□□□ -0.48
MDC1-205ENST00000425072 MPHOSPH10O00566 681 aaKnown RBP12.08□□□□□ -0.48
MDC1-205ENST00000425072 EVX2Q03828 476 aa12.08□□□□□ -0.48
MDC1-205ENST00000425072 ABCB5Q2M3G0 1257 aa12.08□□□□□ -0.48
MDC1-205ENST00000425072 TMEM179Q6ZVK1 233 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms