RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 SCYL3Q8IZE3 742 aa14.36□□□□□ -0.11
LINC00539-202ENST00000423575 NKX2-3Q8TAU0 364 aa14.36□□□□□ -0.11
LINC00539-202ENST00000423575 USP26Q9BXU7 913 aa14.36□□□□□ -0.11
LINC00539-202ENST00000423575 MKNK2Q9HBH9 465 aa14.36□□□□□ -0.11
LINC00539-202ENST00000423575 CREBZFQ9NS37 354 aa14.36□□□□□ -0.11
LINC00539-202ENST00000423575 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.36□□□□□ -0.11
LINC00539-202ENST00000423575 ABT1Q9ULW3 272 aaKnown RBP14.36□□□□□ -0.11
LINC00539-202ENST00000423575 CSADQ9Y600 493 aa14.36□□□□□ -0.11
LINC00539-202ENST00000423575 EPB41L2O43491 1005 aaKnown RBP14.35□□□□□ -0.11
LINC00539-202ENST00000423575 GH2P01242 217 aa14.35□□□□□ -0.11
LINC00539-202ENST00000423575 HSPA4P34932 840 aa14.35□□□□□ -0.11
LINC00539-202ENST00000423575 HTRA3P83110 453 aa14.35□□□□□ -0.11
LINC00539-202ENST00000423575 MFSD6Q6ZSS7 791 aa14.35□□□□□ -0.11
LINC00539-202ENST00000423575 CCDC84Q86UT8 332 aaPredicted RBP14.35□□□□□ -0.11
LINC00539-202ENST00000423575 RASEFQ8IZ41 740 aa14.35□□□□□ -0.11
LINC00539-202ENST00000423575 RNF41Q9H4P4 317 aaPredicted RBP14.35□□□□□ -0.11
LINC00539-202ENST00000423575 ELP3Q9H9T3 547 aa14.35□□□□□ -0.11
LINC00539-202ENST00000423575 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.35□□□□□ -0.11
LINC00539-202ENST00000423575 ZBTB21Q9ULJ3 1066 aa14.35□□□□□ -0.11
LINC00539-202ENST00000423575 UNCXA6NJT0 531 aa14.34□□□□□ -0.11
LINC00539-202ENST00000423575 PCP11498 1178 aaKnown RBP14.34□□□□□ -0.11
LINC00539-202ENST00000423575 GUCY1A2P33402 732 aa14.34□□□□□ -0.11
LINC00539-202ENST00000423575 ABCB5Q2M3G0 1257 aa14.34□□□□□ -0.11
LINC00539-202ENST00000423575 RRP12Q5JTH9 1297 aaKnown RBP14.34□□□□□ -0.11
LINC00539-202ENST00000423575 CNKSR2Q8WXI2 1034 aa14.34□□□□□ -0.11
LINC00539-202ENST00000423575 KCNB2Q92953 911 aa14.34□□□□□ -0.11
LINC00539-202ENST00000423575 CCDC17Q96LX7 622 aa14.34□□□□□ -0.11
LINC00539-202ENST00000423575 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.34□□□□□ -0.11
LINC00539-202ENST00000423575 ZNF287Q9HBT7 754 aa14.34□□□□□ -0.11
LINC00539-202ENST00000423575 TOMM22Q9NS69 142 aa14.34□□□□□ -0.11
LINC00539-202ENST00000423575 PLIN4Q96Q06 1357 aa14.34□□□□□ -0.11
LINC00539-202ENST00000423575 E7EWF7 191 aa14.33□□□□□ -0.12
LINC00539-202ENST00000423575 MPHOSPH10O00566 681 aaKnown RBP14.33□□□□□ -0.12
LINC00539-202ENST00000423575 RANBP6O60518 1105 aaKnown RBP14.33□□□□□ -0.12
LINC00539-202ENST00000423575 EIF5BO60841 1220 aaKnown RBP14.33□□□□□ -0.12
LINC00539-202ENST00000423575 ASNSP08243 561 aa14.33□□□□□ -0.12
LINC00539-202ENST00000423575 PTPRAP18433 802 aa14.33□□□□□ -0.12
LINC00539-202ENST00000423575 FAM47AQ5JRC9 791 aa14.33□□□□□ -0.12
LINC00539-202ENST00000423575 RNF20Q5VTR2 975 aa14.33□□□□□ -0.12
LINC00539-202ENST00000423575 CLEC10AQ8IUN9 316 aa14.33□□□□□ -0.12
LINC00539-202ENST00000423575 PICK1Q9NRD5 415 aa14.33□□□□□ -0.12
LINC00539-202ENST00000423575 SPDYE5A6NIY4 337 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 RASSF10A6NK89 507 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 B4E1Z4 1266 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 HSPA6P17066 643 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 GJA5P36382 358 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 TFAP4Q01664 338 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 COL9A3Q14050 684 aaPredicted RBP14.32□□□□□ -0.12
LINC00539-202ENST00000423575 SEPT2Q15019 361 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 RGMBQ6NW40 437 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 TMEM179Q6ZVK1 233 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 RASAL3Q86YV0 1011 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 ZNF444Q8N0Y2 327 aaPredicted RBP14.32□□□□□ -0.12
LINC00539-202ENST00000423575 NEDD1Q8NHV4 660 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 SLC10A4Q96EP9 437 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 HHIPL1Q96JK4 782 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 BACH2Q9BYV9 841 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 CABP5Q9NP86 173 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 GINM1Q9NU53 330 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 SNX14Q9Y5W7 946 aa14.32□□□□□ -0.12
LINC00539-202ENST00000423575 DOCK1Q14185 1865 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 IGKV6D-41A0A0C4DH26 115 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 TSPY2A6NKD2 308 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 KDM4AO75164 1064 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 SLC10A3P09131 477 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 TSPY3P0CV98 308 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 TSPY8P0CW00 308 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 ZNF157P51786 506 aaPredicted RBP14.31□□□□□ -0.12
LINC00539-202ENST00000423575 RAB3GAP1Q15042 981 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 TSGA10IPQ3SY00 556 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 ERO1BQ86YB8 467 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 ESR2Q92731 530 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 OPTNQ96CV9 577 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 OTUD5Q96G74 571 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 WNK4Q96J92 1243 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 KRT23Q9C075 422 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 CNNM2Q9H8M5 875 aa14.31□□□□□ -0.12
LINC00539-202ENST00000423575 USP17L5A8MUK1 530 aa14.3□□□□□ -0.12
LINC00539-202ENST00000423575 NMT2O60551 498 aa14.3□□□□□ -0.12
LINC00539-202ENST00000423575 ZKSCAN1P17029 563 aaPredicted RBP14.3□□□□□ -0.12
LINC00539-202ENST00000423575 MCCP23508 829 aa14.3□□□□□ -0.12
LINC00539-202ENST00000423575 TRDNQ13061 729 aa14.3□□□□□ -0.12
LINC00539-202ENST00000423575 ADCK5Q3MIX3 580 aa14.3□□□□□ -0.12
LINC00539-202ENST00000423575 CYP4F22Q6NT55 531 aa14.3□□□□□ -0.12
LINC00539-202ENST00000423575 PAXIP1Q6ZW49 1069 aaPredicted RBP14.3□□□□□ -0.12
LINC00539-202ENST00000423575 CYB5R4Q7L1T6 521 aa14.3□□□□□ -0.12
LINC00539-202ENST00000423575 RALYLQ86SE5 291 aaKnown RBP14.3□□□□□ -0.12
LINC00539-202ENST00000423575 MB21D2Q8IYB1 491 aaPredicted RBP14.3□□□□□ -0.12
LINC00539-202ENST00000423575 NCOA7Q8NI08 942 aa14.3□□□□□ -0.12
LINC00539-202ENST00000423575 ZHX2Q9Y6X8 837 aa14.3□□□□□ -0.12
LINC00539-202ENST00000423575 GREB1LQ9C091 1923 aaPredicted RBP14.29□□□□□ -0.12
LINC00539-202ENST00000423575 FAM155AB1AL88 458 aaPredicted RBP14.29□□□□□ -0.12
LINC00539-202ENST00000423575 IRF6O14896 467 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 ICA1Q05084 483 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 PPATQ06203 517 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 MKRN3Q13064 507 aaKnown RBP14.29□□□□□ -0.12
LINC00539-202ENST00000423575 PPIL2Q13356 520 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 KRT32Q14532 448 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 DEFB115Q30KQ5 88 aa14.29□□□□□ -0.12
LINC00539-202ENST00000423575 SPRYD7Q5W111 196 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms