RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 USP5P45974 858 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 CTSWP56202 376 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 SMC1AQ14683 1233 aaKnown RBP12.55□□□□□ -0.4
LIMS1-207ENST00000422797 PUM3Q15397 648 aaKnown RBP12.55□□□□□ -0.4
LIMS1-207ENST00000422797 AKNAD1Q5T1N1 836 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 LDHAL6AQ6ZMR3 332 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 LRRN4CLQ8ND94 238 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 LPIN2Q92539 896 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 CLIC6Q96NY7 704 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 GSDMAQ96QA5 445 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 CNNM1Q9NRU3 951 aa12.55□□□□□ -0.4
LIMS1-207ENST00000422797 FAM217BQ9NTX9 383 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-207ENST00000422797 AKAP11Q9UKA4 1901 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 TCRBV5S4A2TA0A5A2 114 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 TULP2O00295 520 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 POLR2DO15514 142 aaKnown RBP12.54□□□□□ -0.4
LIMS1-207ENST00000422797 ACTN4O43707 911 aaKnown RBP12.54□□□□□ -0.4
LIMS1-207ENST00000422797 PDE8BO95263 885 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 STARD3NLO95772 234 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 MCM3P25205 808 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 CHMP4BP1P59074 171 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 PIP4K2BP78356 416 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 SEMA3FQ13275 785 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 WTAPQ15007 396 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 WHAMMP3Q1A5X7 153 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 ISM2Q6H9L7 571 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 GIGYF2Q6Y7W6 1299 aaKnown RBP12.54□□□□□ -0.4
LIMS1-207ENST00000422797 MFSD6Q6ZSS7 791 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 CADPS2Q86UW7 1296 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 FOXP4Q8IVH2 680 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-207ENST00000422797 VGLL2Q8N8G2 317 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 ANKRD20A12PQ8NF67 263 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 CCDC12Q8WUD4 166 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-207ENST00000422797 PHKBQ93100 1093 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 RNF26Q9BY78 433 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-207ENST00000422797 BRMS1Q9HCU9 246 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 GJB4Q9NTQ9 266 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 CDC23Q9UJX2 597 aa12.54□□□□□ -0.4
LIMS1-207ENST00000422797 SYNRGQ9UMZ2 1314 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 TRIM75PA6NK02 468 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 IDH1O75874 414 aaKnown RBP12.53□□□□□ -0.4
LIMS1-207ENST00000422797 SLC5A1P13866 664 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 BMP6P22004 513 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 ITGA6P23229 1130 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 OAS2P29728 719 aaKnown RBP12.53□□□□□ -0.4
LIMS1-207ENST00000422797 PDE4BQ07343 736 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 RASGRP2Q7LDG7 609 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 HDXQ7Z353 690 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 TMTC1Q8IUR5 882 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 MSANTD4Q8NCY6 345 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 AIFM3Q96NN9 605 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 WDR24Q96S15 920 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 PARD6BQ9BYG5 372 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 PIH1D3Q9NQM4 214 aaKnown RBP12.53□□□□□ -0.4
LIMS1-207ENST00000422797 SERTAD1Q9UHV2 236 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 RAB21Q9UL25 225 aa12.53□□□□□ -0.4
LIMS1-207ENST00000422797 CTAGE9A4FU28 777 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 MAP2K7O14733 419 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 MFAP3LO75121 409 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 PCP11498 1178 aaKnown RBP12.52□□□□□ -0.4
LIMS1-207ENST00000422797 IL2RBP14784 551 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 PBX1P40424 430 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 AKAP17AQ02040 695 aaKnown RBP12.52□□□□□ -0.4
LIMS1-207ENST00000422797 CDKAL1Q5VV42 579 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 TOGARAM2Q6ZUX3 1019 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 RAB11FIP4Q86YS3 637 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 IFNL3Q8IZI9 196 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 CRACR2BQ8N4Y2 399 aaPredicted RBP12.52□□□□□ -0.4
LIMS1-207ENST00000422797 IQUBQ8NA54 791 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 TTLL11Q8NHH1 800 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 CARD10Q9BWT7 1032 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 FUT8Q9BYC5 575 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 WWC3Q9ULE0 1092 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 ADGRG1Q9Y653 693 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 DOCK2Q92608 1830 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 ANKRD36CQ5JPF3 1778 aa12.52□□□□□ -0.4
LIMS1-207ENST00000422797 ERICH4A6NGS2 130 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 BTBD18B2RXH4 712 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 PDE8AO60658 829 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 IVLP07476 585 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 CALM1P0DP23 149 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 CALM2P0DP24 149 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 CALM3P0DP25 149 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 GTF2E1P29083 439 aaPredicted RBP12.52□□□□□ -0.41
LIMS1-207ENST00000422797 TOB1P50616 345 aaPredicted RBP12.52□□□□□ -0.41
LIMS1-207ENST00000422797 FMR1Q06787 632 aaKnown RBP eCLIP12.52□□□□□ -0.41
LIMS1-207ENST00000422797 LONRF2Q1L5Z9 754 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 SH3RF1Q7Z6J0 888 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 IGSF22Q8N9C0 903 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 GOLGA5Q8TBA6 731 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 DHX58Q96C10 678 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 STRN4Q9NRL3 753 aa12.52□□□□□ -0.41
LIMS1-207ENST00000422797 RBM28Q9NW13 759 aaKnown RBP12.52□□□□□ -0.41
LIMS1-207ENST00000422797 COL5A2P05997 1499 aaPredicted RBP12.51□□□□□ -0.41
LIMS1-207ENST00000422797 BCL9LQ86UU0 1499 aa12.51□□□□□ -0.41
LIMS1-207ENST00000422797 FANCGO15287 622 aa12.51□□□□□ -0.41
LIMS1-207ENST00000422797 FGFR2P21802 821 aa12.51□□□□□ -0.41
LIMS1-207ENST00000422797 NT5C2P49902 561 aa12.51□□□□□ -0.41
LIMS1-207ENST00000422797 CUL4BQ13620 913 aa12.51□□□□□ -0.41
LIMS1-207ENST00000422797 NLRP10Q86W26 655 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms