RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ZBTB21Q9ULJ3 1066 aa14.12□□□□□ -0.15
USP4-204ENST00000416417 ZBED9Q6R2W3 1325 aa14.12□□□□□ -0.15
USP4-204ENST00000416417 ASNSP08243 561 aa14.11□□□□□ -0.15
USP4-204ENST00000416417 BACE1P56817 501 aa14.11□□□□□ -0.15
USP4-204ENST00000416417 IRX3P78415 501 aaPredicted RBP14.11□□□□□ -0.15
USP4-204ENST00000416417 EVX2Q03828 476 aa14.11□□□□□ -0.15
USP4-204ENST00000416417 UBE2Q1Q7Z7E8 422 aa14.11□□□□□ -0.15
USP4-204ENST00000416417 METTL16Q86W50 562 aaKnown RBP14.11□□□□□ -0.15
USP4-204ENST00000416417 FOXP4Q8IVH2 680 aaPredicted RBP14.11□□□□□ -0.15
USP4-204ENST00000416417 NKX2-3Q8TAU0 364 aa14.11□□□□□ -0.15
USP4-204ENST00000416417 TXNRD2Q9NNW7 524 aa14.11□□□□□ -0.15
USP4-204ENST00000416417 TMOD4Q9NZQ9 345 aa14.11□□□□□ -0.15
USP4-204ENST00000416417 COG6Q9Y2V7 657 aa14.11□□□□□ -0.15
USP4-204ENST00000416417 FARP2O94887 1054 aaPredicted RBP14.1□□□□□ -0.15
USP4-204ENST00000416417 SGPL1O95470 568 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 GH2P01242 217 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 TFRCP02786 760 aaKnown RBP14.1□□□□□ -0.15
USP4-204ENST00000416417 HLA-DOAP06340 250 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 PABPC4Q13310 644 aaKnown RBP eCLIP14.1□□□□□ -0.15
USP4-204ENST00000416417 IRF5Q13568 498 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 RHPN1Q8TCX5 695 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 EDC3Q96F86 508 aaKnown RBP14.1□□□□□ -0.15
USP4-204ENST00000416417 TBC1D2Q9BYX2 928 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 FOCADQ5VW36 1801 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 USP17L10C9JJH3 530 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 GCLCP48506 637 aaPredicted RBP14.1□□□□□ -0.15
USP4-204ENST00000416417 SLFNL1Q499Z3 407 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 POTEEQ6S8J3 1075 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 CHRDL2Q6WN34 429 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 SIRT2Q8IXJ6 389 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 PXYLP1Q8TE99 480 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 EMILIN3Q9NT22 766 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 GJD2Q9UKL4 321 aa14.1□□□□□ -0.15
USP4-204ENST00000416417 CYP2B6P20813 491 aa14.09□□□□□ -0.15
USP4-204ENST00000416417 FXR1P51114 621 aaKnown RBP eCLIP14.09□□□□□ -0.15
USP4-204ENST00000416417 PLCD1P51178 756 aa14.09□□□□□ -0.15
USP4-204ENST00000416417 HERVK_113P62684 666 aa14.09□□□□□ -0.15
USP4-204ENST00000416417 MAP3K12Q12852 859 aa14.09□□□□□ -0.15
USP4-204ENST00000416417 Q3C1V9 767 aa14.09□□□□□ -0.15
USP4-204ENST00000416417 ERC1Q8IUD2 1116 aa14.09□□□□□ -0.15
USP4-204ENST00000416417 DIS3LQ8TF46 1054 aaKnown RBP14.09□□□□□ -0.15
USP4-204ENST00000416417 DNAJC2Q99543 621 aaKnown RBP14.09□□□□□ -0.15
USP4-204ENST00000416417 PAGR1Q9BTK6 254 aa14.09□□□□□ -0.15
USP4-204ENST00000416417 RAB3GAP1Q15042 981 aa14.08□□□□□ -0.16
USP4-204ENST00000416417 ACER1Q8TDN7 264 aa14.08□□□□□ -0.16
USP4-204ENST00000416417 RIOK1Q9BRS2 568 aaKnown RBP14.08□□□□□ -0.16
USP4-204ENST00000416417 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.08□□□□□ -0.16
USP4-204ENST00000416417 RBPJLQ9UBG7 517 aa14.08□□□□□ -0.16
USP4-204ENST00000416417 MORF4L1Q9UBU8 362 aa14.08□□□□□ -0.16
USP4-204ENST00000416417 MAGEB6P1A0A0J9YX57 407 aa14.07□□□□□ -0.16
USP4-204ENST00000416417 C19orf81C9J6K1 198 aa14.07□□□□□ -0.16
USP4-204ENST00000416417 GOLIM4O00461 696 aa14.07□□□□□ -0.16
USP4-204ENST00000416417 CHGBP05060 677 aa14.07□□□□□ -0.16
USP4-204ENST00000416417 PDE6AP16499 860 aa14.07□□□□□ -0.16
USP4-204ENST00000416417 HOXA7P31268 230 aaPredicted RBP14.07□□□□□ -0.16
USP4-204ENST00000416417 SLC9C2Q5TAH2 1124 aa14.07□□□□□ -0.16
USP4-204ENST00000416417 DOCK3Q8IZD9 2030 aa14.07□□□□□ -0.16
USP4-204ENST00000416417 TRIB2Q92519 343 aa14.07□□□□□ -0.16
USP4-204ENST00000416417 FEZ1Q99689 392 aa14.07□□□□□ -0.16
USP4-204ENST00000416417 PORCNQ9H237 461 aa14.07□□□□□ -0.16
USP4-204ENST00000416417 PAK6Q9NQU5 681 aaPredicted RBP14.07□□□□□ -0.16
USP4-204ENST00000416417 PCDH10Q9P2E7 1040 aa14.07□□□□□ -0.16
USP4-204ENST00000416417 ZNF532Q9HCE3 1301 aa14.06□□□□□ -0.16
USP4-204ENST00000416417 CYP2D6P10635 497 aa14.06□□□□□ -0.16
USP4-204ENST00000416417 CERKLQ49MI3 558 aaPredicted RBP14.06□□□□□ -0.16
USP4-204ENST00000416417 TATDN1Q6P1N9 297 aa14.06□□□□□ -0.16
USP4-204ENST00000416417 USP17L2Q6R6M4 530 aa14.06□□□□□ -0.16
USP4-204ENST00000416417 GPRC5AQ8NFJ5 357 aa14.06□□□□□ -0.16
USP4-204ENST00000416417 PAWRQ96IZ0 340 aaKnown RBP14.06□□□□□ -0.16
USP4-204ENST00000416417 HTATIP2Q9BUP3 242 aa14.06□□□□□ -0.16
USP4-204ENST00000416417 RBM27Q9P2N5 1060 aaKnown RBP14.06□□□□□ -0.16
USP4-204ENST00000416417 SERPINB13Q9UIV8 391 aa14.06□□□□□ -0.16
USP4-204ENST00000416417 MYH1P12882 1939 aa14.06□□□□□ -0.16
USP4-204ENST00000416417 HMGCRP04035 888 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 POLR3DP05423 398 aaPredicted RBP14.05□□□□□ -0.16
USP4-204ENST00000416417 IFIT2P09913 472 aaKnown RBP14.05□□□□□ -0.16
USP4-204ENST00000416417 SHMT1P34896 483 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 ABCB5Q2M3G0 1257 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 HSP90AB4PQ58FF6 505 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 C20orf194Q5TEA3 1177 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 CLASRPQ8N2M8 674 aaKnown RBP14.05□□□□□ -0.16
USP4-204ENST00000416417 LCORLQ8N3X6 602 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 SDR42E1Q8WUS8 393 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 ZBTB40Q9NUA8 1239 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 PLXNB2O15031 1838 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 SMIM22K7EJ46 135 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 CNMDO75829 334 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 GUCY1A2P33402 732 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 ERVK-9P63128 1117 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 ERVK-24P63145 666 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 CCL14Q16627 93 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 TTC6Q86TZ1 520 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 KIF1BPQ96EK5 621 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 CRISPLD2Q9H0B8 497 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 BOLA2Q9H3K6 86 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 ARMT1Q9H993 441 aa14.05□□□□□ -0.16
USP4-204ENST00000416417 TCRBV5S4A2TA0A5A2 114 aa14.04□□□□□ -0.16
USP4-204ENST00000416417 PRKAB2O43741 272 aa14.04□□□□□ -0.16
USP4-204ENST00000416417 SEPT2Q15019 361 aa14.04□□□□□ -0.16
USP4-204ENST00000416417 RPAP2Q8IXW5 612 aaPredicted RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms