RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 SELENOOQ9BVL4 669 aa13.46□□□□□ -0.25
PTPRF-205ENST00000414879 CSADQ9Y600 493 aa13.46□□□□□ -0.25
PTPRF-205ENST00000414879 KRT86O43790 486 aa13.46□□□□□ -0.25
PTPRF-205ENST00000414879 TACC1O75410 805 aa13.46□□□□□ -0.25
PTPRF-205ENST00000414879 CCDC175P0C221 793 aa13.46□□□□□ -0.25
PTPRF-205ENST00000414879 RBM6P78332 1123 aaKnown RBP13.46□□□□□ -0.25
PTPRF-205ENST00000414879 ZNF174Q15697 407 aa13.46□□□□□ -0.25
PTPRF-205ENST00000414879 PIK3AP1Q6ZUJ8 805 aa13.46□□□□□ -0.25
PTPRF-205ENST00000414879 COA1Q9GZY4 146 aa13.46□□□□□ -0.25
PTPRF-205ENST00000414879 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.46□□□□□ -0.254e-7■■□□□ 13.1
PTPRF-205ENST00000414879 FRMD4BQ9Y2L6 1034 aa13.46□□□□□ -0.25
PTPRF-205ENST00000414879 BACH1O14867 736 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 ADD2P35612 726 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 USP8P40818 1118 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 BTDP43251 543 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 NLRX1Q86UT6 975 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 CDAN1Q8IWY9 1227 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 LEO1Q8WVC0 666 aaPredicted RBP13.46□□□□□ -0.26
PTPRF-205ENST00000414879 NUP58Q9BVL2 599 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 LSG1Q9H089 658 aaKnown RBP13.46□□□□□ -0.26
PTPRF-205ENST00000414879 MAGEF1Q9HAY2 307 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 PPFIA3O75145 1194 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 RXRAP19793 462 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 CCDC93Q567U6 631 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 LRRC45Q96CN5 670 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 IFT74Q96LB3 600 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 LRWD1Q9UFC0 647 aa13.46□□□□□ -0.26
PTPRF-205ENST00000414879 CALUO43852 315 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-205ENST00000414879 PRDM1O75626 825 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 LIG1P18858 919 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 PHKA1P46020 1223 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 ASPRV1Q53RT3 343 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 TCHPQ9BT92 498 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 LAD1O00515 517 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 EPB41P11171 864 aaKnown RBP13.45□□□□□ -0.26
PTPRF-205ENST00000414879 EZRP15311 586 aaKnown RBP13.45□□□□□ -0.26
PTPRF-205ENST00000414879 TTLL11Q8NHH1 800 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 RABGAP1Q9Y3P9 1069 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 LRRC7Q96NW7 1537 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 KNDC1Q76NI1 1749 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 GOLGA6L7A0A1B0GV03 622 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 TRIM37O94972 964 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 NOP2P46087 812 aaKnown RBP13.45□□□□□ -0.26
PTPRF-205ENST00000414879 HOOK3Q86VS8 718 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 MYO3BQ8WXR4 1341 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 GCOM1H8Y6P7 765 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-205ENST00000414879 MYZAPP0CAP1 466 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 CHMP4BP1P59074 171 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 RC3H1Q5TC82 1133 aaKnown RBP13.45□□□□□ -0.26
PTPRF-205ENST00000414879 ADALQ6DHV7 355 aa13.45□□□□□ -0.26
PTPRF-205ENST00000414879 TNKSO95271 1327 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 UBR1Q8IWV7 1749 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 CCNT1O60563 726 aaKnown RBP13.44□□□□□ -0.26
PTPRF-205ENST00000414879 SKILP12757 684 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 CPA1P15085 419 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 VPS72Q15906 364 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 CERKLQ49MI3 558 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-205ENST00000414879 KRT26Q7Z3Y9 468 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 PNMA1Q8ND90 353 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 MASTLQ96GX5 879 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 RNF26Q9BY78 433 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-205ENST00000414879 DNM3Q9UQ16 869 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 LUC7L2Q9Y383 392 aaKnown RBP13.44□□□□□ -0.26
PTPRF-205ENST00000414879 CEP83Q9Y592 693 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 CTNNA2P26232 953 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 TUBB2AQ13885 445 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 GNPTABQ3T906 1256 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 ERFEQ4G0M1 354 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 SLFN12Q8IYM2 578 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 TUBB2BQ9BVA1 445 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 TSGA10Q9BZW7 698 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 CPS1P31327 1500 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 H0YCG3 227 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 ACTN2P35609 894 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 KIF5AQ12840 1032 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 CALCRLQ16602 461 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 MYSM1Q5VVJ2 828 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 DRC1Q96MC2 740 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 CARMIL3Q8ND23 1372 aa13.44□□□□□ -0.26
PTPRF-205ENST00000414879 ZNF445P59923 1031 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 TRIML1Q8N9V2 468 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 CCDC42Q96M95 316 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 ARHGEF35A5YM69 484 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 TMCO5BA8MYB1 307 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 CETN3O15182 167 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 NOSTRINQ8IVI9 506 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 BLIDQ8IZY5 108 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 TMEM87AQ8NBN3 555 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 AXIN2Q9Y2T1 843 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 AFF2P51816 1311 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 STX10O60499 249 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 ISCA1Q9BUE6 129 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 PXDNLA1KZ92 1463 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 COL15A1P39059 1388 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 SCG2P13521 617 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 USP14P54578 494 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 GNG11P61952 73 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 ISM2Q6H9L7 571 aa13.43□□□□□ -0.26
PTPRF-205ENST00000414879 NUCKS1Q9H1E3 243 aaKnown RBP13.43□□□□□ -0.26
PTPRF-205ENST00000414879 NCOA5Q9HCD5 579 aaKnown RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms