RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 TFAP4Q01664 338 aa11.4□□□□□ -0.59
RIF1-202ENST00000414861 ANKRD1Q15327 319 aa11.4□□□□□ -0.59
RIF1-202ENST00000414861 SEC23AQ15436 765 aa11.4□□□□□ -0.59
RIF1-202ENST00000414861 TMEM67Q5HYA8 995 aa11.4□□□□□ -0.59
RIF1-202ENST00000414861 METTL16Q86W50 562 aaKnown RBP11.4□□□□□ -0.59
RIF1-202ENST00000414861 CRACR2BQ8N4Y2 399 aaPredicted RBP11.4□□□□□ -0.59
RIF1-202ENST00000414861 ENAHQ8N8S7 591 aaPredicted RBP11.4□□□□□ -0.59
RIF1-202ENST00000414861 IL27Q8NEV9 243 aa11.4□□□□□ -0.59
RIF1-202ENST00000414861 TMEM87BQ96K49 555 aa11.4□□□□□ -0.59
RIF1-202ENST00000414861 BRPF3Q9ULD4 1205 aa11.4□□□□□ -0.59
RIF1-202ENST00000414861 DTNBO60941 627 aa11.39□□□□□ -0.59
RIF1-202ENST00000414861 TNFAIP1Q13829 316 aa11.39□□□□□ -0.59
RIF1-202ENST00000414861 RAB11FIP4Q86YS3 637 aa11.39□□□□□ -0.59
RIF1-202ENST00000414861 UBAC1Q9BSL1 405 aa11.39□□□□□ -0.59
RIF1-202ENST00000414861 DEFB129Q9H1M3 183 aa11.39□□□□□ -0.59
RIF1-202ENST00000414861 IL17RBQ9NRM6 502 aa11.39□□□□□ -0.59
RIF1-202ENST00000414861 FOXD4L1Q9NU39 408 aa11.39□□□□□ -0.59
RIF1-202ENST00000414861 SWAP70Q9UH65 585 aa11.39□□□□□ -0.59
RIF1-202ENST00000414861 AKR1B1P15121 316 aa11.39□□□□□ -0.59
RIF1-202ENST00000414861 EPHX2P34913 555 aa11.39□□□□□ -0.59
RIF1-202ENST00000414861 STK3Q13188 491 aa11.39□□□□□ -0.59
RIF1-202ENST00000414861 ZNF444Q8N0Y2 327 aaPredicted RBP11.39□□□□□ -0.59
RIF1-202ENST00000414861 NECAB1Q8N987 351 aa11.39□□□□□ -0.59
RIF1-202ENST00000414861 ZSCAN10Q96SZ4 725 aaPredicted RBP11.39□□□□□ -0.59
RIF1-202ENST00000414861 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.39□□□□□ -0.59
RIF1-202ENST00000414861 PLIN4Q96Q06 1357 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 TSPY3P0CV98 308 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 TSPY8P0CW00 308 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 TNNI2P48788 182 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 RRP1BQ14684 758 aaKnown RBP11.38□□□□□ -0.59
RIF1-202ENST00000414861 PRAMEF18Q5VWM3 479 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 IQCA1Q86XH1 822 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 CLEC10AQ8IUN9 316 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 APOBEC3FQ8IUX4 373 aaKnown RBP11.38□□□□□ -0.59
RIF1-202ENST00000414861 ZNF287Q9HBT7 754 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 MYH4Q9Y623 1939 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 ATAD5Q96QE3 1844 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 KLF18A0A0U1RQI7 1052 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 EVCP57679 992 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 CUL4AQ13619 759 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 WTAPQ15007 396 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 SART3Q15020 963 aaKnown RBP11.38□□□□□ -0.59
RIF1-202ENST00000414861 RCSD1Q6JBY9 416 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 TATDN1Q6P1N9 297 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 DLK2Q6UY11 383 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 MIGA2Q7L4E1 593 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 SGMS1Q86VZ5 419 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 FOXP4Q8IVH2 680 aaPredicted RBP11.38□□□□□ -0.59
RIF1-202ENST00000414861 MYL10Q9BUA6 226 aa11.38□□□□□ -0.59
RIF1-202ENST00000414861 TAF1DQ9H5J8 278 aaPredicted RBP11.38□□□□□ -0.59
RIF1-202ENST00000414861 SSC5DA1L4H1 1573 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 RXRAP19793 462 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 LIFRP42702 1097 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 APOA5Q6Q788 366 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 CCDC83Q8IWF9 413 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 NEDD1Q8NHV4 660 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 MTA3Q9BTC8 594 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 TRIM34Q9BYJ4 488 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 SH2B1Q9NRF2 756 aaPredicted RBP11.37□□□□□ -0.59
RIF1-202ENST00000414861 DAXXQ9UER7 740 aaPredicted RBP11.37□□□□□ -0.59
RIF1-202ENST00000414861 NAP1L2Q9ULW6 460 aaPredicted RBP11.37□□□□□ -0.59
RIF1-202ENST00000414861 HPS5Q9UPZ3 1129 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 GOLGA8BA8MQT2 603 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 GDF11O95390 407 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 PDIA3P30101 505 aaKnown RBP11.37□□□□□ -0.59
RIF1-202ENST00000414861 JAG1P78504 1218 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 SCRN1Q12765 414 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 NBPF12Q5TAG4 269 aaPredicted RBP11.37□□□□□ -0.59
RIF1-202ENST00000414861 CEP95Q96GE4 821 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 ZSCAN31Q96LW9 406 aaPredicted RBP11.37□□□□□ -0.59
RIF1-202ENST00000414861 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.37□□□□□ -0.597e-11■■■■□ 26.1
RIF1-202ENST00000414861 NCOA5Q9HCD5 579 aaKnown RBP11.37□□□□□ -0.59
RIF1-202ENST00000414861 HERC5Q9UII4 1024 aaKnown RBP11.37□□□□□ -0.59
RIF1-202ENST00000414861 PITPNM2Q9BZ72 1349 aa11.37□□□□□ -0.59
RIF1-202ENST00000414861 IGKV6D-41A0A0C4DH26 115 aa11.36□□□□□ -0.59
RIF1-202ENST00000414861 ERICH2A1L162 156 aa11.36□□□□□ -0.59
RIF1-202ENST00000414861 ADM5C9JUS6 153 aa11.36□□□□□ -0.59
RIF1-202ENST00000414861 POTEIP0CG38 1075 aa11.36□□□□□ -0.59
RIF1-202ENST00000414861 POTEJP0CG39 1038 aa11.36□□□□□ -0.59
RIF1-202ENST00000414861 NFXL1Q6ZNB6 911 aa11.36□□□□□ -0.59
RIF1-202ENST00000414861 USP50Q70EL3 339 aaPredicted RBP11.36□□□□□ -0.59
RIF1-202ENST00000414861 MICU3Q86XE3 530 aa11.36□□□□□ -0.59
RIF1-202ENST00000414861 GTF3C6Q969F1 213 aa11.36□□□□□ -0.59
RIF1-202ENST00000414861 IQCA1LA6NCM1 817 aa11.36□□□□□ -0.59
RIF1-202ENST00000414861 PFKFB2O60825 505 aa11.36□□□□□ -0.59
RIF1-202ENST00000414861 NT5C2P49902 561 aa11.36□□□□□ -0.59
RIF1-202ENST00000414861 CCT2P78371 535 aaKnown RBP11.36□□□□□ -0.59
RIF1-202ENST00000414861 CERKLQ49MI3 558 aaPredicted RBP11.36□□□□□ -0.59
RIF1-202ENST00000414861 EAPPQ56P03 285 aaPredicted RBP11.36□□□□□ -0.59
RIF1-202ENST00000414861 IFIT1BQ5T764 474 aaKnown RBP11.36□□□□□ -0.59
RIF1-202ENST00000414861 ZNF274Q96GC6 653 aaPredicted RBP11.36□□□□□ -0.59
RIF1-202ENST00000414861 SLKQ9H2G2 1235 aaPredicted RBP11.36□□□□□ -0.59
RIF1-202ENST00000414861 TCP11L1Q9NUJ3 509 aa11.36□□□□□ -0.59
RIF1-202ENST00000414861 MPHOSPH10O00566 681 aaKnown RBP11.35□□□□□ -0.59
RIF1-202ENST00000414861 TBC1D12O60347 775 aa11.35□□□□□ -0.59
RIF1-202ENST00000414861 HSP90AA1P07900 732 aaKnown RBP11.35□□□□□ -0.59
RIF1-202ENST00000414861 CCDC144CPQ8IYA2 1237 aa11.35□□□□□ -0.59
RIF1-202ENST00000414861 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.35□□□□□ -0.59
RIF1-202ENST00000414861 STX8Q9UNK0 236 aa11.35□□□□□ -0.59
RIF1-202ENST00000414861 FZD1Q9UP38 647 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms