RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 ALDH1B1P30837 517 aa12.68□□□□□ -0.38
PTPRF-204ENST00000412568 RABL6Q3YEC7 729 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-204ENST00000412568 KRT79Q5XKE5 535 aa12.68□□□□□ -0.38
PTPRF-204ENST00000412568 NLGN1Q8N2Q7 840 aa12.68□□□□□ -0.38
PTPRF-204ENST00000412568 COL15A1P39059 1388 aa12.68□□□□□ -0.38
PTPRF-204ENST00000412568 SOS2Q07890 1332 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-204ENST00000412568 XDHP47989 1333 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 ATP2B4P23634 1241 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 CACNB3P54284 484 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 GNG11P61952 73 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 AXDND1Q5T1B0 1012 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-204ENST00000412568 CCDC181Q5TID7 509 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 TBC1D10CQ8IV04 446 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 ZNF397Q8NF99 534 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-204ENST00000412568 TEKT1Q969V4 418 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.67□□□□□ -0.38
PTPRF-204ENST00000412568 RNF216Q9NWF9 866 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-204ENST00000412568 BIN2Q9UBW5 565 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-204ENST00000412568 TCP10L2B9ZVM9 353 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 PFKFB1P16118 471 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 USP8P40818 1118 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 NOSTRINQ8IVI9 506 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 ARPP21Q9UBL0 812 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-204ENST00000412568 BCS1LQ9Y276 419 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 RIPOR2Q9Y4F9 1068 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 CLRN2A0PK11 232 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 KLRF2D3W0D1 207 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 CHMP2AO43633 222 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 NDUFA8P51970 172 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 ARID5AQ03989 594 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 TBC1D22AQ8WUA7 517 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 BSDC1Q9NW68 430 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-204ENST00000412568 NARFQ9UHQ1 456 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-204ENST00000412568 ZMYM6O95789 1325 aa12.67□□□□□ -0.38
PTPRF-204ENST00000412568 SERTAD1Q9UHV2 236 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 MEGF6O75095 1541 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 KDM4FA0A1W2PPD8 638 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 PSMA7O14818 248 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 CDC25AP30304 524 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 CLEC4GQ6UXB4 293 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 CCDC150Q8NCX0 1101 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 GJD4Q96KN9 370 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-204ENST00000412568 CPVLQ9H3G5 476 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 HOMER2Q9NSB8 354 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 PDE6BP35913 854 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 SPA17Q15506 151 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 PTPN21Q16825 1174 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 INF2Q27J81 1249 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 STOX1Q6ZVD7 989 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 SYCP3Q8IZU3 236 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 VPS16Q9H269 839 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 DNAI1Q9UI46 699 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 PXDNQ92626 1479 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 USP17L3A6NCW0 530 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 USP17L4A6NCW7 530 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 COBLO75128 1261 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 YEATS4O95619 227 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 ZNF75DP51815 510 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 MYL5Q02045 173 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 GRM1Q13255 1194 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 USP17L1Q7RTZ2 530 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 SPICE1Q8N0Z3 855 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 SLC44A5Q8NCS7 719 aa12.66□□□□□ -0.38
PTPRF-204ENST00000412568 CARMIL3Q8ND23 1372 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 TRIM28Q13263 835 aaKnown RBP12.65□□□□□ -0.38
PTPRF-204ENST00000412568 DYMQ7RTS9 669 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 RICTORQ6R327 1708 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 NEURL4Q96JN8 1562 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 SMCO2A6NFE2 343 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 PPEF1O14829 653 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-204ENST00000412568 KIF5CO60282 957 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 NMT2O60551 498 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 IGSF3O75054 1194 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 RXRBP28702 533 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 MED23Q9ULK4 1368 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 FAM170AA1A519 330 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 PPP1R12BO60237 982 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-204ENST00000412568 CUTAO60888 179 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 RAD17O75943 681 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 HSPA1LP34931 641 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 MRPL12P52815 198 aaKnown RBP12.65□□□□□ -0.38
PTPRF-204ENST00000412568 FAM193AP78312 1265 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 NFIXQ14938 502 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 DLGAP5Q15398 846 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 ADALQ6DHV7 355 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 CYB5R4Q7L1T6 521 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 DRC1Q96MC2 740 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 TTC14Q96N46 770 aa12.65□□□□□ -0.38
PTPRF-204ENST00000412568 TBCAO75347 108 aaKnown RBP12.64□□□□□ -0.39
PTPRF-204ENST00000412568 CFBP00751 764 aa12.64□□□□□ -0.39
PTPRF-204ENST00000412568 RFX5P48382 616 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-204ENST00000412568 KARSQ15046 597 aaKnown RBP12.64□□□□□ -0.39
PTPRF-204ENST00000412568 NFE2L3Q9Y4A8 694 aa12.64□□□□□ -0.39
PTPRF-204ENST00000412568 CASQ1P31415 396 aa12.64□□□□□ -0.39
PTPRF-204ENST00000412568 TSPYL1Q9H0U9 437 aa12.64□□□□□ -0.39
PTPRF-204ENST00000412568 RMND1Q9NWS8 449 aa12.64□□□□□ -0.39
PTPRF-204ENST00000412568 TBC1D7Q9P0N9 293 aa12.64□□□□□ -0.39
PTPRF-204ENST00000412568 CLEC11AQ9Y240 323 aa12.64□□□□□ -0.39
PTPRF-204ENST00000412568 LEMD3Q9Y2U8 911 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 212.4 ms