RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ZSCAN10Q96SZ4 725 aaPredicted RBP15.34■□□□□ 0.05
VPS54-203ENST00000409558 USP17L3A6NCW0 530 aa15.34■□□□□ 0.05
VPS54-203ENST00000409558 USP17L4A6NCW7 530 aa15.34■□□□□ 0.05
VPS54-203ENST00000409558 EVCP57679 992 aa15.34■□□□□ 0.05
VPS54-203ENST00000409558 ATP2B2Q01814 1243 aa15.34■□□□□ 0.05
VPS54-203ENST00000409558 USP17L1Q7RTZ2 530 aa15.34■□□□□ 0.05
VPS54-203ENST00000409558 MRFAP1L1Q96HT8 127 aa15.34■□□□□ 0.05
VPS54-203ENST00000409558 SPATA31A1Q5TZJ5 1347 aa15.33■□□□□ 0.05
VPS54-203ENST00000409558 CCZ1BP86790 482 aa15.33■□□□□ 0.05
VPS54-203ENST00000409558 CCZ1P86791 482 aaPredicted RBP15.33■□□□□ 0.05
VPS54-203ENST00000409558 FMR1Q06787 632 aaKnown RBP eCLIP15.33■□□□□ 0.05
VPS54-203ENST00000409558 CTCFLQ8NI51 663 aaPredicted RBP15.33■□□□□ 0.05
VPS54-203ENST00000409558 CCNL1Q9UK58 526 aaPredicted RBP15.33■□□□□ 0.05
VPS54-203ENST00000409558 IFNAR1P17181 557 aa15.33■□□□□ 0.04
VPS54-203ENST00000409558 CCT6AP40227 531 aaKnown RBP15.33■□□□□ 0.04
VPS54-203ENST00000409558 MYL5Q02045 173 aa15.33■□□□□ 0.04
VPS54-203ENST00000409558 ELF2Q15723 593 aa15.33■□□□□ 0.04
VPS54-203ENST00000409558 LRRN4CLQ8ND94 238 aa15.33■□□□□ 0.04
VPS54-203ENST00000409558 EPC1Q9H2F5 836 aa15.33■□□□□ 0.04
VPS54-203ENST00000409558 SMTNL1A8MU46 457 aa15.33■□□□□ 0.04
VPS54-203ENST00000409558 URI1O94763 535 aaPredicted RBP15.33■□□□□ 0.04
VPS54-203ENST00000409558 DEXIO95424 95 aa15.33■□□□□ 0.04
VPS54-203ENST00000409558 POSTNQ15063 836 aa15.33■□□□□ 0.04
VPS54-203ENST00000409558 ATL3Q6DD88 541 aa15.33■□□□□ 0.04
VPS54-203ENST00000409558 MAP3K14Q99558 947 aa15.33■□□□□ 0.04
VPS54-203ENST00000409558 NRDCO43847 1150 aa15.32■□□□□ 0.04
VPS54-203ENST00000409558 NFIXQ14938 502 aa15.32■□□□□ 0.04
VPS54-203ENST00000409558 GRIK5Q16478 980 aa15.32■□□□□ 0.04
VPS54-203ENST00000409558 TGFBRAP1Q8WUH2 860 aa15.32■□□□□ 0.04
VPS54-203ENST00000409558 MYO5AQ9Y4I1 1855 aaKnown RBP15.32■□□□□ 0.04
VPS54-203ENST00000409558 TRIM75PA6NK02 468 aa15.32■□□□□ 0.04
VPS54-203ENST00000409558 RIMBP2O15034 1052 aa15.32■□□□□ 0.04
VPS54-203ENST00000409558 BMP6P22004 513 aa15.32■□□□□ 0.04
VPS54-203ENST00000409558 ZNF384Q8TF68 577 aa15.32■□□□□ 0.04
VPS54-203ENST00000409558 CCDC196A0A1B0GTZ2 297 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 RFC4P35249 363 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 TFAP4Q01664 338 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 CTR9Q6PD62 1173 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.31■□□□□ 0.04
VPS54-203ENST00000409558 WASF1Q92558 559 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 ABCC12Q96J65 1359 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 XBP1P17861 261 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 LIFRP42702 1097 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 NCAPHQ15003 741 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 SAMD1Q6SPF0 538 aaPredicted RBP15.31■□□□□ 0.04
VPS54-203ENST00000409558 SLURP2P0DP57 97 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 PICALMQ13492 652 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 SGMS1Q86VZ5 419 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 SYMPKQ92797 1274 aaKnown RBP15.31■□□□□ 0.04
VPS54-203ENST00000409558 MAN1B1Q9UKM7 699 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 HEATR3Q7Z4Q2 680 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 STAG1Q8WVM7 1258 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 SHISA4Q96DD7 197 aa15.31■□□□□ 0.04
VPS54-203ENST00000409558 UBAP1LF5GYI3 381 aa15.3■□□□□ 0.04
VPS54-203ENST00000409558 CUTAO60888 179 aa15.3■□□□□ 0.04
VPS54-203ENST00000409558 STAG2Q8N3U4 1231 aa15.3■□□□□ 0.04
VPS54-203ENST00000409558 PP2D1A8MPX8 630 aa15.3■□□□□ 0.04
VPS54-203ENST00000409558 NCBP1Q09161 790 aaKnown RBP15.3■□□□□ 0.04
VPS54-203ENST00000409558 PTGDRQ13258 359 aa15.3■□□□□ 0.04
VPS54-203ENST00000409558 RESP18Q5W5W9 173 aa15.3■□□□□ 0.04
VPS54-203ENST00000409558 A0A087X0B3 334 aa15.3■□□□□ 0.04
VPS54-203ENST00000409558 CAVIN2O95810 425 aa15.3■□□□□ 0.04
VPS54-203ENST00000409558 GNAT2P19087 354 aa15.3■□□□□ 0.04
VPS54-203ENST00000409558 E4F1Q66K89 784 aaPredicted RBP15.3■□□□□ 0.04
VPS54-203ENST00000409558 KIF18AQ8NI77 898 aa15.3■□□□□ 0.04
VPS54-203ENST00000409558 KRT2P35908 639 aa15.29■□□□□ 0.04
VPS54-203ENST00000409558 LZTFL1Q9NQ48 299 aa15.29■□□□□ 0.04
VPS54-203ENST00000409558 ERCC6LQ2NKX8 1250 aa15.29■□□□□ 0.04
VPS54-203ENST00000409558 CLEC10AQ8IUN9 316 aa15.29■□□□□ 0.04
VPS54-203ENST00000409558 SRBD1Q8N5C6 995 aaKnown RBP15.29■□□□□ 0.04
VPS54-203ENST00000409558 RTCBQ9Y3I0 505 aaKnown RBP15.29■□□□□ 0.04
VPS54-203ENST00000409558 LAMA4Q16363 1823 aa15.29■□□□□ 0.04
VPS54-203ENST00000409558 TERF1P54274 439 aa15.29■□□□□ 0.04
VPS54-203ENST00000409558 MEX3CQ5U5Q3 659 aaKnown RBP15.29■□□□□ 0.04
VPS54-203ENST00000409558 IRX2Q9BZI1 471 aaPredicted RBP15.29■□□□□ 0.04
VPS54-203ENST00000409558 CRNKL1Q9BZJ0 848 aaKnown RBP15.29■□□□□ 0.04
VPS54-203ENST00000409558 C6orf229H3BNL8 230 aa15.29■□□□□ 0.04
VPS54-203ENST00000409558 TPTE2Q6XPS3 522 aa15.29■□□□□ 0.04
VPS54-203ENST00000409558 RIOK1Q9BRS2 568 aaKnown RBP15.29■□□□□ 0.04
VPS54-203ENST00000409558 MTF1Q14872 753 aa15.28■□□□□ 0.04
VPS54-203ENST00000409558 RILPL1Q5EBL4 403 aa15.28■□□□□ 0.04
VPS54-203ENST00000409558 BRMS1Q9HCU9 246 aa15.28■□□□□ 0.04
VPS54-203ENST00000409558 TEX33O43247 280 aa15.28■□□□□ 0.04
VPS54-203ENST00000409558 SARM1Q6SZW1 724 aa15.28■□□□□ 0.04
VPS54-203ENST00000409558 ARHGEF1Q92888 912 aaKnown RBP15.28■□□□□ 0.04
VPS54-203ENST00000409558 PPP1R13BQ96KQ4 1090 aa15.28■□□□□ 0.04
VPS54-203ENST00000409558 VPS16Q9H269 839 aa15.28■□□□□ 0.04
VPS54-203ENST00000409558 KAT14Q9H8E8 782 aa15.28■□□□□ 0.04
VPS54-203ENST00000409558 DCP1AQ9NPI6 582 aaPredicted RBP15.28■□□□□ 0.04
VPS54-203ENST00000409558 FBXO2Q9UK22 296 aaPredicted RBP15.28■□□□□ 0.04
VPS54-203ENST00000409558 FAM196AQ6ZSG2 479 aa15.28■□□□□ 0.04
VPS54-203ENST00000409558 SH3RF3Q8TEJ3 882 aaPredicted RBP15.28■□□□□ 0.04
VPS54-203ENST00000409558 TAF1P21675 1872 aa15.28■□□□□ 0.04
VPS54-203ENST00000409558 NSUN4Q96CB9 384 aaKnown RBP15.27■□□□□ 0.04
VPS54-203ENST00000409558 HOOK1Q9UJC3 728 aaKnown RBP15.27■□□□□ 0.04
VPS54-203ENST00000409558 GLI3P10071 1580 aa15.27■□□□□ 0.04
VPS54-203ENST00000409558 BSDC1Q9NW68 430 aaPredicted RBP15.27■□□□□ 0.04
VPS54-203ENST00000409558 ZNF804BA4D1E1 1349 aa15.27■□□□□ 0.04
VPS54-203ENST00000409558 ADAMTS7Q9UKP4 1686 aa15.27■□□□□ 0.03
VPS54-203ENST00000409558 TJP1Q07157 1748 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms