RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 PPARAQ07869 468 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 CUL4BQ13620 913 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 KMT5BQ4FZB7 885 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 CDKAL1Q5VV42 579 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 CPLX2Q6PUV4 134 aaKnown RBP4.44□□□□□ -1.7
RTN4-209ENST00000405240 CLEC4GQ6UXB4 293 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 MFSD6Q6ZSS7 791 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 TMC6Q7Z403 805 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 CCDC85AQ96PX6 553 aaPredicted RBP4.44□□□□□ -1.7
RTN4-209ENST00000405240 ZNF215Q9UL58 517 aaPredicted RBP4.44□□□□□ -1.7
RTN4-209ENST00000405240 BTBD18B2RXH4 712 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 SEMA3EO15041 775 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 FOXN1O15353 648 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 IDH1O75874 414 aaKnown RBP4.44□□□□□ -1.7
RTN4-209ENST00000405240 SLU7O95391 586 aaKnown RBP4.44□□□□□ -1.7
RTN4-209ENST00000405240 CRKLP46109 303 aaKnown RBP4.44□□□□□ -1.7
RTN4-209ENST00000405240 TPM4P67936 248 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 FMR1Q06787 632 aaKnown RBP eCLIP4.44□□□□□ -1.75e-11■□□□□ 8.4
RTN4-209ENST00000405240 ITPK1Q13572 414 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 NAA30Q147X3 362 aaPredicted RBP4.44□□□□□ -1.7
RTN4-209ENST00000405240 POSTNQ15063 836 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 BARGINQ6ZT62 677 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 FBXO33Q7Z6M2 555 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 RAB11FIP4Q86YS3 637 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 TC2NQ8N9U0 490 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 ANKS1AQ92625 1134 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 CDC5LQ99459 802 aaKnown RBP4.44□□□□□ -1.7
RTN4-209ENST00000405240 NAPBQ9H115 298 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 RNF41Q9H4P4 317 aaPredicted RBP4.44□□□□□ -1.7
RTN4-209ENST00000405240 ZNF446Q9NWS9 450 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 ROBO3Q96MS0 1386 aa4.44□□□□□ -1.7
RTN4-209ENST00000405240 A0A087X0B3 334 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 CCDC196A0A1B0GTZ2 297 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 VWA3AA6NCI4 1184 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 M0R2N6 131 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 IFIT3O14879 490 aaKnown RBP4.43□□□□□ -1.7
RTN4-209ENST00000405240 ORC4O43929 436 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 PRR29P0C7W0 189 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 BCAMP50895 628 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 CHRNDQ07001 517 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 TROAPQ12815 778 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 UBE4AQ14139 1066 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 E2F4Q16254 413 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 RTN1Q16799 776 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 CCDC152Q4G0S7 254 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 KANK3Q6NY19 840 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 DIS3L2Q8IYB7 885 aaKnown RBP4.43□□□□□ -1.7
RTN4-209ENST00000405240 ZNF654Q8IZM8 581 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 KIFC2Q96AC6 838 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 SLC26A6Q9BXS9 759 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 FANCLQ9NW38 375 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 BSDC1Q9NW68 430 aaPredicted RBP4.43□□□□□ -1.7
RTN4-209ENST00000405240 PCDHB6Q9Y5E3 794 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 LRRC10BA6NIK2 292 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 TMEM232C9JQI7 657 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 EXOC5O00471 708 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 STX10O60499 249 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 DDAH1O94760 285 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 ZRANB2O95218 330 aaKnown RBP eCLIP4.43□□□□□ -1.7
RTN4-209ENST00000405240 RXRAP19793 462 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 SFPQP23246 707 aaKnown RBP eCLIP4.43□□□□□ -1.72e-6■■■□□ 15.5
RTN4-209ENST00000405240 PLCD1P51178 756 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 UBASH3AP57075 661 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 ETF1P62495 437 aaKnown RBP4.43□□□□□ -1.7
RTN4-209ENST00000405240 GABPB1Q06547 395 aaPredicted RBP4.43□□□□□ -1.7
RTN4-209ENST00000405240 DPYDQ12882 1025 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 WTAPQ15007 396 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 SBK1Q52WX2 424 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 FILIP1Q7Z7B0 1213 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 MICU3Q86XE3 530 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 C4orf32Q8N8J7 132 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 OXER1Q8TDS5 423 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 MYL10Q9BUA6 226 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 MKRN1Q9UHC7 482 aaKnown RBP4.43□□□□□ -1.7
RTN4-209ENST00000405240 PARP3Q9Y6F1 533 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 SLC4A4Q9Y6R1 1079 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 ITIH6Q6UXX5 1313 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 KDM4FA0A1W2PPD8 638 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 ARHGAP6O43182 974 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 EARS2Q5JPH6 523 aaKnown RBP4.43□□□□□ -1.7
RTN4-209ENST00000405240 ENAHQ8N8S7 591 aaPredicted RBP4.43□□□□□ -1.7
RTN4-209ENST00000405240 PANX2Q96RD6 677 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 ZSCAN10Q96SZ4 725 aaPredicted RBP4.43□□□□□ -1.7
RTN4-209ENST00000405240 NACAP1Q9BZK3 213 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 RBM28Q9NW13 759 aaKnown RBP4.43□□□□□ -1.7
RTN4-209ENST00000405240 SERTAD1Q9UHV2 236 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 NAP1L2Q9ULW6 460 aaPredicted RBP4.43□□□□□ -1.7
RTN4-209ENST00000405240 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.43□□□□□ -1.73e-7■□□□□ 8.9
RTN4-209ENST00000405240 SPATA31A5Q5VU36 1347 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 SPATA31A7Q8IWB4 1347 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 CNTNAP5Q8WYK1 1306 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 UBR3Q6ZT12 1888 aa4.43□□□□□ -1.7
RTN4-209ENST00000405240 PPP1R3GB7ZBB8 358 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 BIN1O00499 593 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 GTF2E1P29083 439 aaPredicted RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 LMOD1P29536 600 aaPredicted RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 MAP3K9P80192 1104 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 ATP2C1P98194 919 aaPredicted RBP4.42□□□□□ -1.7
RTN4-209ENST00000405240 SEMA3FQ13275 785 aa4.42□□□□□ -1.7
RTN4-209ENST00000405240 TRIM29Q14134 588 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms