RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 HOXD10P28358 340 aa16.27■□□□□ 0.2
VCX3A-202ENST00000398729 SLC9C2Q5TAH2 1124 aa16.27■□□□□ 0.2
VCX3A-202ENST00000398729 METTL16Q86W50 562 aaKnown RBP16.27■□□□□ 0.2
VCX3A-202ENST00000398729 ZNF280CQ8ND82 737 aa16.27■□□□□ 0.2
VCX3A-202ENST00000398729 NKX2-3Q8TAU0 364 aa16.27■□□□□ 0.2
VCX3A-202ENST00000398729 RNF208Q9H0X6 261 aa16.27■□□□□ 0.2
VCX3A-202ENST00000398729 GABRQQ9UN88 632 aa16.27■□□□□ 0.2
VCX3A-202ENST00000398729 MYH1P12882 1939 aa16.26■□□□□ 0.19
VCX3A-202ENST00000398729 ASNSP08243 561 aa16.26■□□□□ 0.19
VCX3A-202ENST00000398729 CYP2C8P10632 490 aa16.26■□□□□ 0.19
VCX3A-202ENST00000398729 PRKCZQ05513 592 aa16.26■□□□□ 0.19
VCX3A-202ENST00000398729 SPP2Q13103 211 aa16.26■□□□□ 0.19
VCX3A-202ENST00000398729 RRP1BQ14684 758 aaKnown RBP16.26■□□□□ 0.19
VCX3A-202ENST00000398729 AS3MTQ9HBK9 375 aa16.26■□□□□ 0.19
VCX3A-202ENST00000398729 AGTPBP1Q9UPW5 1226 aa16.26■□□□□ 0.19
VCX3A-202ENST00000398729 MYPNQ86TC9 1320 aa16.25■□□□□ 0.19
VCX3A-202ENST00000398729 MAGEB6P1A0A0J9YX57 407 aa16.25■□□□□ 0.19
VCX3A-202ENST00000398729 PDE6AP16499 860 aa16.25■□□□□ 0.19
VCX3A-202ENST00000398729 ATP5JP18859 108 aa16.25■□□□□ 0.19
VCX3A-202ENST00000398729 PROCA1Q8NCQ7 364 aaPredicted RBP16.25■□□□□ 0.19
VCX3A-202ENST00000398729 U2AF1L4Q8WU68 220 aaKnown RBP16.25■□□□□ 0.19
VCX3A-202ENST00000398729 UNC93B1Q9H1C4 597 aa16.25■□□□□ 0.19
VCX3A-202ENST00000398729 BOLA2Q9H3K6 86 aa16.25■□□□□ 0.19
VCX3A-202ENST00000398729 DNAJC18Q9H819 358 aa16.25■□□□□ 0.19
VCX3A-202ENST00000398729 GINM1Q9NU53 330 aa16.25■□□□□ 0.19
VCX3A-202ENST00000398729 PAG1Q9NWQ8 432 aa16.25■□□□□ 0.19
VCX3A-202ENST00000398729 TTC6Q86TZ1 520 aa16.24■□□□□ 0.19
VCX3A-202ENST00000398729 SMCR8Q8TEV9 937 aaPredicted RBP16.24■□□□□ 0.19
VCX3A-202ENST00000398729 RIOK1Q9BRS2 568 aaKnown RBP16.24■□□□□ 0.19
VCX3A-202ENST00000398729 HTATIP2Q9BUP3 242 aa16.24■□□□□ 0.19
VCX3A-202ENST00000398729 BIN2Q9UBW5 565 aaPredicted RBP16.24■□□□□ 0.19
VCX3A-202ENST00000398729 PNMA3Q9UL41 463 aa16.24■□□□□ 0.19
VCX3A-202ENST00000398729 ZNF532Q9HCE3 1301 aa16.23■□□□□ 0.19
VCX3A-202ENST00000398729 SGPL1O95470 568 aa16.23■□□□□ 0.19
VCX3A-202ENST00000398729 HMGCS2P54868 508 aa16.23■□□□□ 0.19
VCX3A-202ENST00000398729 PABPC4Q13310 644 aaKnown RBP eCLIP16.23■□□□□ 0.19
VCX3A-202ENST00000398729 EDC3Q96F86 508 aaKnown RBP16.23■□□□□ 0.19
VCX3A-202ENST00000398729 HAUS7Q99871 368 aa16.23■□□□□ 0.19
VCX3A-202ENST00000398729 WDR18Q9BV38 432 aa16.23■□□□□ 0.19
VCX3A-202ENST00000398729 CRNKL1Q9BZJ0 848 aaKnown RBP16.23■□□□□ 0.19
VCX3A-202ENST00000398729 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.23■□□□□ 0.19
VCX3A-202ENST00000398729 DCTPP1Q9H773 170 aa16.23■□□□□ 0.19
VCX3A-202ENST00000398729 SERPINB13Q9UIV8 391 aa16.23■□□□□ 0.19
VCX3A-202ENST00000398729 TCRBV5S4A2TA0A5A2 114 aa16.22■□□□□ 0.19
VCX3A-202ENST00000398729 SOX1O00570 391 aaPredicted RBP16.22■□□□□ 0.19
VCX3A-202ENST00000398729 SMARCA5O60264 1052 aaPredicted RBP16.22■□□□□ 0.19
VCX3A-202ENST00000398729 GDF11O95390 407 aa16.22■□□□□ 0.19
VCX3A-202ENST00000398729 FCGRTP55899 365 aa16.22■□□□□ 0.19
VCX3A-202ENST00000398729 UBXN2AP68543 259 aa16.22■□□□□ 0.19
VCX3A-202ENST00000398729 SH3D19Q5HYK7 790 aa16.22■□□□□ 0.19
VCX3A-202ENST00000398729 TREML2Q5T2D2 321 aa16.22■□□□□ 0.19
VCX3A-202ENST00000398729 EHD4Q9H223 541 aa16.22■□□□□ 0.19
VCX3A-202ENST00000398729 ZBTB21Q9ULJ3 1066 aa16.22■□□□□ 0.19
VCX3A-202ENST00000398729 NR2E3Q9Y5X4 410 aa16.22■□□□□ 0.19
VCX3A-202ENST00000398729 LOC285556D6RIA3 1793 aa16.22■□□□□ 0.19
VCX3A-202ENST00000398729 ADCY3O60266 1144 aa16.21■□□□□ 0.19
VCX3A-202ENST00000398729 FARP2O94887 1054 aaPredicted RBP16.21■□□□□ 0.19
VCX3A-202ENST00000398729 POLR3DP05423 398 aaPredicted RBP16.21■□□□□ 0.19
VCX3A-202ENST00000398729 ADD2P35612 726 aa16.21■□□□□ 0.19
VCX3A-202ENST00000398729 RRP1P56182 461 aaKnown RBP16.21■□□□□ 0.19
VCX3A-202ENST00000398729 JAG1P78504 1218 aa16.21■□□□□ 0.19
VCX3A-202ENST00000398729 MTMR2Q13614 643 aa16.21■□□□□ 0.19
VCX3A-202ENST00000398729 TMOD4Q9NZQ9 345 aa16.21■□□□□ 0.19
VCX3A-202ENST00000398729 DOCK3Q8IZD9 2030 aa16.21■□□□□ 0.18
VCX3A-202ENST00000398729 NAV1Q8NEY1 1877 aa16.2■□□□□ 0.18
VCX3A-202ENST00000398729 C19orf81C9J6K1 198 aa16.2■□□□□ 0.18
VCX3A-202ENST00000398729 USP17L10C9JJH3 530 aa16.2■□□□□ 0.18
VCX3A-202ENST00000398729 ELNP15502 786 aa16.2■□□□□ 0.18
VCX3A-202ENST00000398729 FLT3LGP49771 235 aa16.2■□□□□ 0.18
VCX3A-202ENST00000398729 BACE1P56817 501 aa16.2■□□□□ 0.18
VCX3A-202ENST00000398729 TATDN1Q6P1N9 297 aa16.2■□□□□ 0.18
VCX3A-202ENST00000398729 SLAIN1Q8ND83 568 aa16.2■□□□□ 0.18
VCX3A-202ENST00000398729 SLC17A8Q8NDX2 589 aa16.2■□□□□ 0.18
VCX3A-202ENST00000398729 GPATCH3Q96I76 525 aa16.2■□□□□ 0.18
VCX3A-202ENST00000398729 YTHDC1Q96MU7 727 aaKnown RBP16.2■□□□□ 0.18
VCX3A-202ENST00000398729 ECHDC1Q9NTX5 307 aa16.2■□□□□ 0.18
VCX3A-202ENST00000398729 MGAMO43451 1857 aa16.2■□□□□ 0.18
VCX3A-202ENST00000398729 DLL1O00548 723 aa16.19■□□□□ 0.18
VCX3A-202ENST00000398729 GH2P01242 217 aa16.19■□□□□ 0.18
VCX3A-202ENST00000398729 PLCD1P51178 756 aa16.19■□□□□ 0.18
VCX3A-202ENST00000398729 SHROOM1Q2M3G4 852 aaPredicted RBP16.19■□□□□ 0.18
VCX3A-202ENST00000398729 ZSCAN25Q6NSZ9 544 aa16.19■□□□□ 0.18
VCX3A-202ENST00000398729 LCORLQ8N3X6 602 aa16.19■□□□□ 0.18
VCX3A-202ENST00000398729 ANKRD13CQ8N6S4 541 aa16.19■□□□□ 0.18
VCX3A-202ENST00000398729 MCM9Q9NXL9 1143 aa16.19■□□□□ 0.18
VCX3A-202ENST00000398729 STAP2Q9UGK3 403 aa16.19■□□□□ 0.18
VCX3A-202ENST00000398729 DDX60LQ5H9U9 1706 aaKnown RBP16.19■□□□□ 0.18
VCX3A-202ENST00000398729 MYH7P12883 1935 aa16.18■□□□□ 0.18
VCX3A-202ENST00000398729 TFRCP02786 760 aaKnown RBP16.18■□□□□ 0.18
VCX3A-202ENST00000398729 GCLCP48506 637 aaPredicted RBP16.18■□□□□ 0.18
VCX3A-202ENST00000398729 UBE3CQ15386 1083 aa16.18■□□□□ 0.18
VCX3A-202ENST00000398729 FAM110CQ1W6H9 321 aa16.18■□□□□ 0.18
VCX3A-202ENST00000398729 CERKLQ49MI3 558 aaPredicted RBP16.18■□□□□ 0.18
VCX3A-202ENST00000398729 PXYLP1Q8TE99 480 aa16.18■□□□□ 0.18
VCX3A-202ENST00000398729 SDR42E1Q8WUS8 393 aa16.18■□□□□ 0.18
VCX3A-202ENST00000398729 LRCH3Q96II8 777 aa16.18■□□□□ 0.18
VCX3A-202ENST00000398729 ASCC2Q9H1I8 757 aaPredicted RBP16.18■□□□□ 0.18
VCX3A-202ENST00000398729 ARMT1Q9H993 441 aa16.18■□□□□ 0.18
VCX3A-202ENST00000398729 DCP1AQ9NPI6 582 aaPredicted RBP16.18■□□□□ 0.18
VCX3A-202ENST00000398729 PCDHB15Q9Y5E8 787 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms