RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 ERCC5P28715 1186 aaPredicted RBP12.37□□□□□ -0.43
HPS4-202ENST00000398145 RAPGEF1Q13905 1077 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 SYCP3Q8IZU3 236 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 CUL5Q93034 780 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 CCDC77Q9BR77 488 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 IFIH1Q9BYX4 1025 aaKnown RBP12.37□□□□□ -0.43
HPS4-202ENST00000398145 EPN1Q9Y6I3 576 aaPredicted RBP12.37□□□□□ -0.43
HPS4-202ENST00000398145 KAT6BQ8WYB5 2073 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 ZNF532Q9HCE3 1301 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 MED14O60244 1454 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 AKNAD1Q5T1N1 836 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 VSTM4Q8IW00 320 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 FBF1Q8TES7 1133 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 BLZF1Q9H2G9 400 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 FAM204AQ9H8W3 233 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.37□□□□□ -0.43
HPS4-202ENST00000398145 MCM9Q9NXL9 1143 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 MTRF1LQ9UGC7 380 aaKnown RBP12.37□□□□□ -0.43
HPS4-202ENST00000398145 A0A1W2PRG0 241 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 SMIM23A6NLE4 172 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 ATP1A3P13637 1013 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 RNASE9P60153 205 aaKnown RBP12.37□□□□□ -0.43
HPS4-202ENST00000398145 GNGT1P63211 74 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 TNIP1Q15025 636 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 PUM3Q15397 648 aaKnown RBP12.37□□□□□ -0.43
HPS4-202ENST00000398145 LETM2Q2VYF4 491 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 ZMYM1Q5SVZ6 1142 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 SLC35F6Q8N357 371 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 TRIM58Q8NG06 486 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 VPS54Q9P1Q0 977 aa12.37□□□□□ -0.43
HPS4-202ENST00000398145 IQGAP3Q86VI3 1631 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 POLR1AO95602 1720 aaPredicted RBP12.36□□□□□ -0.43
HPS4-202ENST00000398145 ZPR1O75312 459 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 CTDSPL2Q05D32 466 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 SLC9C1Q4G0N8 1177 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 MYO1AQ9UBC5 1043 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 KCNJ18B7U540 433 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 MAP2K2P36507 400 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 KCNJ12Q14500 433 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 OSBPL5Q9H0X9 879 aaPredicted RBP12.36□□□□□ -0.43
HPS4-202ENST00000398145 C19orf44Q9H6X5 657 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 TSKSQ9UJT2 592 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 FAN1Q9Y2M0 1017 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 PREX2Q70Z35 1606 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 NUTM2BA6NNL0 878 aaPredicted RBP12.36□□□□□ -0.43
HPS4-202ENST00000398145 NUTM2EB1AL46 878 aaPredicted RBP12.36□□□□□ -0.43
HPS4-202ENST00000398145 CASP14P31944 242 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 KIF23Q02241 960 aaPredicted RBP12.36□□□□□ -0.43
HPS4-202ENST00000398145 NAA25Q14CX7 972 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 KCNF1Q9H3M0 494 aa12.36□□□□□ -0.43
HPS4-202ENST00000398145 A1BGP04217 495 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 LIG3P49916 1009 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 NBPF14Q5TI25 921 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 CAPS2Q9BXY5 557 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 PRDM1O75626 825 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 DNM2P50570 870 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 MORC3Q14149 939 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 CCDC6Q16204 474 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 PROSER3Q2NL68 480 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 VWA3BQ502W6 1294 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 DDX12PQ92771 950 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 RRP36Q96EU6 259 aaKnown RBP12.35□□□□□ -0.43
HPS4-202ENST00000398145 H7C1D1 291 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 SASH1O94885 1247 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 ZSCAN20P17040 1043 aaPredicted RBP12.35□□□□□ -0.43
HPS4-202ENST00000398145 GSTO1P78417 241 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 PTPN21Q16825 1174 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 ZNF654Q8IZM8 581 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 SWAP70Q9UH65 585 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 TNNI2P48788 182 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 TOB2Q14106 344 aaPredicted RBP12.35□□□□□ -0.43
HPS4-202ENST00000398145 IQCDQ96DY2 449 aa12.35□□□□□ -0.43
HPS4-202ENST00000398145 USP27XA6NNY8 438 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 DZIP3Q86Y13 1208 aaKnown RBP12.34□□□□□ -0.43
HPS4-202ENST00000398145 CCDC50Q8IVM0 306 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 ENOX1Q8TC92 643 aaKnown RBP12.34□□□□□ -0.43
HPS4-202ENST00000398145 GSDMAQ96QA5 445 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 CAPN7Q9Y6W3 813 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 KIF1BO60333 1816 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 PNPLA6Q8IY17 1366 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 hCG_1642624A0A1W2PR95 340 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 VIMP08670 466 aaKnown RBP12.34□□□□□ -0.43
HPS4-202ENST00000398145 TCP1P17987 556 aaKnown RBP12.34□□□□□ -0.43
HPS4-202ENST00000398145 C2CD5Q86YS7 1000 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 RGS22Q8NE09 1264 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 ANKRD7Q92527 254 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 LPIN2Q92539 896 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 PAIP2Q9BPZ3 127 aaKnown RBP12.34□□□□□ -0.43
HPS4-202ENST00000398145 ADAM21Q9UKJ8 722 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 GOLGA8KD6RF30 607 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 CTNNA2P26232 953 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 MAP3K4Q9Y6R4 1608 aa12.34□□□□□ -0.43
HPS4-202ENST00000398145 CCT5P48643 541 aa12.33□□□□□ -0.43
HPS4-202ENST00000398145 GRIPAP1Q4V328 841 aa12.33□□□□□ -0.43
HPS4-202ENST00000398145 TYW1BQ6NUM6 668 aa12.33□□□□□ -0.43
HPS4-202ENST00000398145 APOA5Q6Q788 366 aa12.33□□□□□ -0.43
HPS4-202ENST00000398145 CADPS2Q86UW7 1296 aa12.33□□□□□ -0.43
HPS4-202ENST00000398145 FANCBQ8NB91 859 aa12.33□□□□□ -0.43
HPS4-202ENST00000398145 FAM207AQ9NSI2 230 aaPredicted RBP12.33□□□□□ -0.43
HPS4-202ENST00000398145 E7EVH7 732 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms