RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 ARID4AP29374 1257 aaPredicted RBP12.69□□□□□ -0.38
TTC28-201ENST00000397906 LRMPQ12912 555 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 ZNF569Q5MCW4 686 aa12.69□□□□□ -0.38
TTC28-201ENST00000397906 EDC3Q96F86 508 aaKnown RBP12.69□□□□□ -0.38
TTC28-201ENST00000397906 PIK3C2GO75747 1445 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 CRCPO75575 148 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 GTF2F1P35269 517 aaKnown RBP eCLIP12.68□□□□□ -0.38
TTC28-201ENST00000397906 NONOQ15233 471 aaKnown RBP eCLIP12.68□□□□□ -0.38
TTC28-201ENST00000397906 CERS3Q8IU89 383 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.68□□□□□ -0.38
TTC28-201ENST00000397906 V9GYY5 206 aaPredicted RBP12.68□□□□□ -0.38
TTC28-201ENST00000397906 ATP2A2P16615 1042 aaKnown RBP12.68□□□□□ -0.38
TTC28-201ENST00000397906 FLAD1Q8NFF5 587 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 SPICE1Q8N0Z3 855 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 TMEM94Q12767 1356 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 DNMT1P26358 1616 aaKnown RBP12.68□□□□□ -0.38
TTC28-201ENST00000397906 EIF4A1P60842 406 aaKnown RBP12.68□□□□□ -0.38
TTC28-201ENST00000397906 INF2Q27J81 1249 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 CERKLQ49MI3 558 aaPredicted RBP12.68□□□□□ -0.38
TTC28-201ENST00000397906 GIMAP7Q8NHV1 300 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 CARD10Q9BWT7 1032 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 ABCA5Q8WWZ7 1642 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 USP17L12C9JPN9 530 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 USP17L21D6R901 530 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 TNNI1P19237 187 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 EXOC3O60645 756 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 BTDP43251 543 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 HERC4Q5GLZ8 1057 aaPredicted RBP12.68□□□□□ -0.38
TTC28-201ENST00000397906 DKC1O60832 514 aaKnown RBP eCLIP12.68□□□□□ -0.385e-9■■□□□ 12.9
TTC28-201ENST00000397906 RHOXF2BP0C7M4 288 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 CD19P15391 556 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 DNAJC21Q5F1R6 531 aaKnown RBP12.68□□□□□ -0.38
TTC28-201ENST00000397906 SMC1BQ8NDV3 1235 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 RHOXF2Q9BQY4 288 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 CCDC77Q9BR77 488 aa12.68□□□□□ -0.38
TTC28-201ENST00000397906 ABT1Q9ULW3 272 aaKnown RBP12.68□□□□□ -0.38
TTC28-201ENST00000397906 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.68□□□□□ -0.38
TTC28-201ENST00000397906 ZBTB7BO15156 539 aaPredicted RBP12.67□□□□□ -0.38
TTC28-201ENST00000397906 CHRNDQ07001 517 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 RILPL1Q5EBL4 403 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 THRAP3Q9Y2W1 955 aaKnown RBP12.67□□□□□ -0.38
TTC28-201ENST00000397906 GAS7O60861 476 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 MCM6Q14566 821 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 BEND3Q5T5X7 828 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 DIS3L2Q8IYB7 885 aaKnown RBP12.67□□□□□ -0.38
TTC28-201ENST00000397906 ARPP21Q9UBL0 812 aaPredicted RBP12.67□□□□□ -0.38
TTC28-201ENST00000397906 MAP7D1Q3KQU3 841 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 MED10Q9BTT4 135 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 DCAF15Q66K64 600 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 MIER3Q7Z3K6 550 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 STAMQ92783 540 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 BLZF1Q9H2G9 400 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 LOC102724428A0A0B4J2F2 783 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 SIK1P57059 783 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 TNFAIP3P21580 790 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 USP26Q9BXU7 913 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 KCNK9Q9NPC2 374 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 SYNRGQ9UMZ2 1314 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 TLDC2A0PJX2 215 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 UVSSAQ2YD98 709 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 KBTBD3Q8NAB2 608 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 SUGCTQ9HAC7 445 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 ASAP1Q9ULH1 1129 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 JAKMIP2Q96AA8 810 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 SNX14Q9Y5W7 946 aa12.67□□□□□ -0.38
TTC28-201ENST00000397906 GNPTABQ3T906 1256 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 CFAP157Q5JU67 520 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 TBC1D8BQ0IIM8 1120 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 KIAA0232Q92628 1395 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 CEP170Q5SW79 1584 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 LIN9Q5TKA1 542 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 FBF1Q8TES7 1133 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 UBLCP1Q8WVY7 318 aaPredicted RBP12.66□□□□□ -0.38
TTC28-201ENST00000397906 ST7Q9NRC1 585 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 SMCO2A6NFE2 343 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 FAM196AQ6ZSG2 479 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 KRT25Q7Z3Z0 450 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 GTPBP4Q9BZE4 634 aaKnown RBP12.66□□□□□ -0.38
TTC28-201ENST00000397906 UBXN2AP68543 259 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 PRR16Q569H4 304 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 CSGALNACT2Q8N6G5 542 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 FAM204AQ9H8W3 233 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 YARSP54577 528 aaKnown RBP12.66□□□□□ -0.38
TTC28-201ENST00000397906 ZBTB16Q05516 673 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 CCDC6Q16204 474 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 DPP9Q86TI2 863 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 KDM5AP29375 1690 aaKnown RBP12.66□□□□□ -0.38
TTC28-201ENST00000397906 ICA1Q05084 483 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 CCDC122Q5T0U0 273 aa12.66□□□□□ -0.38
TTC28-201ENST00000397906 CFAP74Q9C0B2 1584 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 GLT8D2Q9H1C3 349 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 ASIC2Q16515 512 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 ANO1Q5XXA6 986 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 KRT27Q7Z3Y8 459 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 OTUD6AQ7L8S5 288 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 REXO1Q8N1G1 1221 aaKnown RBP12.65□□□□□ -0.38
TTC28-201ENST00000397906 APOL6Q9BWW8 343 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 KCNH3Q9ULD8 1083 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 TRIM35Q9UPQ4 493 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 LONRF3Q496Y0 759 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms