RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 STRBPQ96SI9 672 aaKnown RBP28.48■■■□□ 2.15
SHMT1-204ENST00000395682 AS3MTQ9HBK9 375 aa28.48■■■□□ 2.15
SHMT1-204ENST00000395682 CYP2D6P10635 497 aa28.47■■■□□ 2.15
SHMT1-204ENST00000395682 CHD1LQ86WJ1 897 aa28.47■■■□□ 2.15
SHMT1-204ENST00000395682 ERO1AQ96HE7 468 aa28.47■■■□□ 2.15
SHMT1-204ENST00000395682 FSD1Q9BTV5 496 aa28.47■■■□□ 2.15
SHMT1-204ENST00000395682 ZBTB21Q9ULJ3 1066 aa28.47■■■□□ 2.15
SHMT1-204ENST00000395682 PHIPQ8WWQ0 1821 aa28.46■■■□□ 2.15
SHMT1-204ENST00000395682 NUCB1Q02818 461 aa28.46■■■□□ 2.15
SHMT1-204ENST00000395682 EVX2Q03828 476 aa28.46■■■□□ 2.15
SHMT1-204ENST00000395682 CERKLQ49MI3 558 aaPredicted RBP28.46■■■□□ 2.15
SHMT1-204ENST00000395682 DDRGK1Q96HY6 314 aa28.46■■■□□ 2.15
SHMT1-204ENST00000395682 WDR18Q9BV38 432 aa28.46■■■□□ 2.15
SHMT1-204ENST00000395682 GH2P01242 217 aa28.45■■■□□ 2.14
SHMT1-204ENST00000395682 SHMT1P34896 483 aa28.45■■■□□ 2.14
SHMT1-204ENST00000395682 GABPAQ06546 454 aa28.45■■■□□ 2.14
SHMT1-204ENST00000395682 PKN2Q16513 984 aaKnown RBP28.45■■■□□ 2.14
SHMT1-204ENST00000395682 CD99L2Q8TCZ2 262 aa28.45■■■□□ 2.14
SHMT1-204ENST00000395682 ATAD5Q96QE3 1844 aa28.44■■■□□ 2.14
SHMT1-204ENST00000395682 USP17L12C9JPN9 530 aa28.44■■■□□ 2.14
SHMT1-204ENST00000395682 USP17L21D6R901 530 aa28.44■■■□□ 2.14
SHMT1-204ENST00000395682 NAV1Q8NEY1 1877 aa28.43■■■□□ 2.14
SHMT1-204ENST00000395682 CYP2C8P10632 490 aa28.43■■■□□ 2.14
SHMT1-204ENST00000395682 HMGCS2P54868 508 aa28.43■■■□□ 2.14
SHMT1-204ENST00000395682 ABCB5Q2M3G0 1257 aa28.43■■■□□ 2.14
SHMT1-204ENST00000395682 AMOTL1Q8IY63 956 aa28.43■■■□□ 2.14
SHMT1-204ENST00000395682 PARK7Q99497 189 aaKnown RBP28.43■■■□□ 2.14
SHMT1-204ENST00000395682 SLC45A1Q9Y2W3 748 aa28.43■■■□□ 2.14
SHMT1-204ENST00000395682 M0R2C6 588 aa28.42■■■□□ 2.14
SHMT1-204ENST00000395682 C12orf60Q5U649 245 aa28.42■■■□□ 2.14
SHMT1-204ENST00000395682 C17orf99Q6UX52 265 aa28.42■■■□□ 2.14
SHMT1-204ENST00000395682 PROCA1Q8NCQ7 364 aaPredicted RBP28.42■■■□□ 2.14
SHMT1-204ENST00000395682 EVI5LQ96CN4 794 aa28.42■■■□□ 2.14
SHMT1-204ENST00000395682 DYNLL2Q96FJ2 89 aa28.42■■■□□ 2.14
SHMT1-204ENST00000395682 CABP5Q9NP86 173 aa28.42■■■□□ 2.14
SHMT1-204ENST00000395682 CPA4Q9UI42 421 aa28.42■■■□□ 2.14
SHMT1-204ENST00000395682 AGTPBP1Q9UPW5 1226 aa28.42■■■□□ 2.14
SHMT1-204ENST00000395682 TRIM17Q9Y577 477 aa28.42■■■□□ 2.14
SHMT1-204ENST00000395682 DDX60LQ5H9U9 1706 aaKnown RBP28.41■■■□□ 2.14
SHMT1-204ENST00000395682 CYP2D7A0A087X1C5 515 aa28.41■■■□□ 2.14
SHMT1-204ENST00000395682 GSG1L2A8MUP6 293 aa28.41■■■□□ 2.14
SHMT1-204ENST00000395682 GPAA1O43292 621 aa28.41■■■□□ 2.14
SHMT1-204ENST00000395682 BACE1P56817 501 aa28.41■■■□□ 2.14
SHMT1-204ENST00000395682 MTMR2Q13614 643 aa28.41■■■□□ 2.14
SHMT1-204ENST00000395682 SH3D19Q5HYK7 790 aa28.41■■■□□ 2.14
SHMT1-204ENST00000395682 TREML2Q5T2D2 321 aa28.41■■■□□ 2.14
SHMT1-204ENST00000395682 CTR9Q6PD62 1173 aa28.41■■■□□ 2.14
SHMT1-204ENST00000395682 OTOP1Q7RTM1 612 aa28.41■■■□□ 2.14
SHMT1-204ENST00000395682 SEC62Q99442 399 aaKnown RBP28.41■■■□□ 2.14
SHMT1-204ENST00000395682 CCDC85CA6NKD9 419 aa28.4■■■□□ 2.14
SHMT1-204ENST00000395682 USP17L10C9JJH3 530 aa28.4■■■□□ 2.14
SHMT1-204ENST00000395682 RAB3GAP1Q15042 981 aa28.4■■■□□ 2.14
SHMT1-204ENST00000395682 ZMYM1Q5SVZ6 1142 aa28.4■■■□□ 2.14
SHMT1-204ENST00000395682 EFCC1Q9HA90 598 aa28.4■■■□□ 2.14
SHMT1-204ENST00000395682 SWAP70Q9UH65 585 aa28.4■■■□□ 2.14
SHMT1-204ENST00000395682 ADGRA2Q96PE1 1338 aa28.4■■■□□ 2.14
SHMT1-204ENST00000395682 C19orf81C9J6K1 198 aa28.39■■■□□ 2.14
SHMT1-204ENST00000395682 GNAT2P19087 354 aa28.39■■■□□ 2.14
SHMT1-204ENST00000395682 CAP1Q01518 475 aa28.39■■■□□ 2.14
SHMT1-204ENST00000395682 PLEKHM2Q8IWE5 1019 aa28.39■■■□□ 2.14
SHMT1-204ENST00000395682 SLC44A5Q8NCS7 719 aa28.39■■■□□ 2.14
SHMT1-204ENST00000395682 TAOK2Q9UL54 1235 aa28.39■■■□□ 2.14
SHMT1-204ENST00000395682 PTPRFP10586 1907 aa28.39■■■□□ 2.13
SHMT1-204ENST00000395682 SMIM22K7EJ46 135 aa28.38■■■□□ 2.13
SHMT1-204ENST00000395682 APPP05067 770 aa28.38■■■□□ 2.13
SHMT1-204ENST00000395682 ARHGEF6Q15052 776 aa28.38■■■□□ 2.13
SHMT1-204ENST00000395682 GIMAP6Q6P9H5 292 aa28.38■■■□□ 2.13
SHMT1-204ENST00000395682 FBXO46Q6PJ61 603 aaPredicted RBP28.38■■■□□ 2.13
SHMT1-204ENST00000395682 TMOD4Q9NZQ9 345 aa28.38■■■□□ 2.13
SHMT1-204ENST00000395682 BAZ2AQ9UIF9 1905 aaKnown RBP28.37■■■□□ 2.13
SHMT1-204ENST00000395682 MPHOSPH10O00566 681 aaKnown RBP28.37■■■□□ 2.13
SHMT1-204ENST00000395682 KIF22Q14807 665 aa28.37■■■□□ 2.13
SHMT1-204ENST00000395682 PATL2C9JE40 543 aaKnown RBP28.36■■■□□ 2.13
SHMT1-204ENST00000395682 CDK8P49336 464 aa28.36■■■□□ 2.13
SHMT1-204ENST00000395682 LACTBP83111 547 aaPredicted RBP28.36■■■□□ 2.13
SHMT1-204ENST00000395682 PABPC4Q13310 644 aaKnown RBP eCLIP28.36■■■□□ 2.13
SHMT1-204ENST00000395682 SBK1Q52WX2 424 aa28.36■■■□□ 2.13
SHMT1-204ENST00000395682 ARPP21Q9UBL0 812 aaPredicted RBP28.36■■■□□ 2.13
SHMT1-204ENST00000395682 HPS5Q9UPZ3 1129 aa28.36■■■□□ 2.13
SHMT1-204ENST00000395682 TRIM6-TRIM34B2RNG4 842 aa28.35■■■□□ 2.13
SHMT1-204ENST00000395682 GUCY1A2P33402 732 aa28.35■■■□□ 2.13
SHMT1-204ENST00000395682 SEPT2Q15019 361 aa28.35■■■□□ 2.13
SHMT1-204ENST00000395682 SMCR8Q8TEV9 937 aaPredicted RBP28.35■■■□□ 2.13
SHMT1-204ENST00000395682 ARHGAP39Q9C0H5 1083 aa28.35■■■□□ 2.13
SHMT1-204ENST00000395682 OSBPL3Q9H4L5 887 aa28.35■■■□□ 2.13
SHMT1-204ENST00000395682 PNMA3Q9UL41 463 aa28.35■■■□□ 2.13
SHMT1-204ENST00000395682 BCRP11274 1271 aa28.34■■■□□ 2.13
SHMT1-204ENST00000395682 USP17L2Q6R6M4 530 aa28.34■■■□□ 2.13
SHMT1-204ENST00000395682 C16orf86Q6ZW13 317 aa28.34■■■□□ 2.13
SHMT1-204ENST00000395682 EMILIN3Q9NT22 766 aa28.34■■■□□ 2.13
SHMT1-204ENST00000395682 MINDY4BA8MYZ0 360 aa28.33■■■□□ 2.13
SHMT1-204ENST00000395682 ECM2O94769 699 aaPredicted RBP28.33■■■□□ 2.13
SHMT1-204ENST00000395682 OSBPP22059 807 aa28.33■■■□□ 2.13
SHMT1-204ENST00000395682 TDO2P48775 406 aa28.33■■■□□ 2.13
SHMT1-204ENST00000395682 IFNL3Q8IZI9 196 aa28.33■■■□□ 2.13
SHMT1-204ENST00000395682 ACER1Q8TDN7 264 aa28.33■■■□□ 2.13
SHMT1-204ENST00000395682 RILPL2Q969X0 211 aa28.33■■■□□ 2.13
SHMT1-204ENST00000395682 FEZ1Q99689 392 aa28.33■■■□□ 2.13
SHMT1-204ENST00000395682 EPB41L4AQ9HCS5 686 aaPredicted RBP28.33■■■□□ 2.13
SHMT1-204ENST00000395682 PTPN22Q9Y2R2 807 aa28.33■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms