RNA–Protein interactions for RNA: ENST00000392128.6

SMARCAL1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SMARCAL1, Length 2,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-203ENST00000392128 SLC4A8Q2Y0W8 1093 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 CCDC178Q5BJE1 867 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 C16orf86Q6ZW13 317 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 TTC6Q86TZ1 520 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 NUP133Q8WUM0 1156 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 WASF1Q92558 559 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 ALG1Q9BT22 464 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 MKNK2Q9HBH9 465 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 TCP11L1Q9NUJ3 509 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 CFAP45Q9UL16 551 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 ZNF445P59923 1031 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 TFAP4Q01664 338 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 GUCY1B3Q02153 619 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 TROAPQ12815 778 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 ZSCAN23Q3MJ62 389 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 NBPF11Q86T75 865 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 ANKS1AQ92625 1134 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 ZDHHC15Q96MV8 337 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 RBM28Q9NW13 759 aaKnown RBP13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 TMEM63CQ9P1W3 806 aa13.32□□□□□ -0.28
SMARCAL1-203ENST00000392128 BRCA1P38398 1863 aaKnown RBP13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 GOLGA6L3A6NEY3 463 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 PPIP5K2O43314 1243 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 CRKP46108 304 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 SCNN1DP51172 638 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 TGFB2P61812 414 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 APOBEC3HQ6NTF7 200 aaKnown RBP13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 DGKHQ86XP1 1220 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 TRIM22Q8IYM9 498 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 LEO1Q8WVC0 666 aaPredicted RBP13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 SYAP1Q96A49 352 aaPredicted RBP13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 SLC26A6Q9BXS9 759 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 MTFR1LQ9H019 292 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 MYH8P13535 1937 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 NMT2O60551 498 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 WDHD1O75717 1129 aaPredicted RBP13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 RCSD1Q6JBY9 416 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 ILDR1Q86SU0 546 aaPredicted RBP13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 ZNF444Q8N0Y2 327 aaPredicted RBP13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 CRACR2BQ8N4Y2 399 aaPredicted RBP13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 SPATA32Q96LK8 384 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 IL17RBQ9NRM6 502 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 USP40Q9NVE5 1235 aa13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 RBM27Q9P2N5 1060 aaKnown RBP13.31□□□□□ -0.28
SMARCAL1-203ENST00000392128 ZBTB7AO95365 584 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 RASA1P20936 1047 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 CDK8P49336 464 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 SOGA3Q5TF21 947 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 OTUD7BQ6GQQ9 843 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 CDC42EP5Q6NZY7 148 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 BRAPQ7Z569 592 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 ZNF396Q96N95 335 aaPredicted RBP13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 AIFM3Q96NN9 605 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 VPS33BQ9H267 617 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 TFIP11Q9UBB9 837 aaKnown RBP13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 DEXIO95424 95 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 TSPY3P0CV98 308 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 TSPY8P0CW00 308 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 POLD1P28340 1107 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 L1TD1Q5T7N2 865 aaKnown RBP13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 SLC44A5Q8NCS7 719 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 RNF26Q9BY78 433 aaPredicted RBP13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 SERPINA10Q9UK55 444 aa13.3□□□□□ -0.28
SMARCAL1-203ENST00000392128 KIF23Q02241 960 aaPredicted RBP13.29□□□□□ -0.28
SMARCAL1-203ENST00000392128 KRT40Q6A162 431 aa13.29□□□□□ -0.28
SMARCAL1-203ENST00000392128 KIAA0825Q8IV33 1275 aa13.29□□□□□ -0.28
SMARCAL1-203ENST00000392128 DDX4Q9NQI0 724 aaKnown RBP13.29□□□□□ -0.28
SMARCAL1-203ENST00000392128 GJB4Q9NTQ9 266 aa13.29□□□□□ -0.28
SMARCAL1-203ENST00000392128 YDJCA8MPS7 323 aa13.29□□□□□ -0.28
SMARCAL1-203ENST00000392128 FUT2Q10981 343 aa13.29□□□□□ -0.28
SMARCAL1-203ENST00000392128 PICALMQ13492 652 aa13.29□□□□□ -0.28
SMARCAL1-203ENST00000392128 TRIM29Q14134 588 aa13.29□□□□□ -0.28
SMARCAL1-203ENST00000392128 MAP3K14Q99558 947 aa13.29□□□□□ -0.28
SMARCAL1-203ENST00000392128 GABPAQ06546 454 aa13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 NEDD1Q8NHV4 660 aa13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 CTCFLQ8NI51 663 aaPredicted RBP13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 OSBPL5Q9H0X9 879 aaPredicted RBP13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 KAT14Q9H8E8 782 aa13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 PIM2Q9P1W9 311 aa13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 RCOR1Q9UKL0 485 aa13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 GUCY1A2P33402 732 aa13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 TMTC3Q6ZXV5 915 aa13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 GAS2L3Q86XJ1 694 aa13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 USP28Q96RU2 1077 aa13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 ATF5Q9Y2D1 282 aaPredicted RBP13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 PLIN4Q96Q06 1357 aa13.28□□□□□ -0.28
SMARCAL1-203ENST00000392128 FER1L6Q2WGJ9 1857 aa13.27□□□□□ -0.28
SMARCAL1-203ENST00000392128 MYO3BQ8WXR4 1341 aa13.27□□□□□ -0.29
SMARCAL1-203ENST00000392128 KIF28PB7ZC32 967 aa13.27□□□□□ -0.29
SMARCAL1-203ENST00000392128 UBE2Q2LH0YL09 131 aa13.27□□□□□ -0.29
SMARCAL1-203ENST00000392128 PRPF3O43395 683 aaKnown RBP13.27□□□□□ -0.29
SMARCAL1-203ENST00000392128 NPM3O75607 178 aaKnown RBP13.27□□□□□ -0.29
SMARCAL1-203ENST00000392128 CMTR1Q8N1G2 835 aaKnown RBP13.27□□□□□ -0.29
SMARCAL1-203ENST00000392128 COL4A5P29400 1685 aa13.27□□□□□ -0.29
SMARCAL1-203ENST00000392128 PLEKHA8P1O95397 391 aa13.27□□□□□ -0.29
SMARCAL1-203ENST00000392128 U2AF2P26368 475 aaKnown RBP eCLIP13.27□□□□□ -0.296e-7■■■■□ 26.4
SMARCAL1-203ENST00000392128 KIF5BP33176 963 aa13.27□□□□□ -0.29
SMARCAL1-203ENST00000392128 CCDC183Q5T5S1 534 aa13.27□□□□□ -0.29
SMARCAL1-203ENST00000392128 MYSM1Q5VVJ2 828 aa13.27□□□□□ -0.29
SMARCAL1-203ENST00000392128 PNMA1Q8ND90 353 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms