RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 DAAM2Q86T65 1068 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 CXorf38Q8TB03 319 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 PICK1Q9NRD5 415 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 ZRANB1Q9UGI0 708 aa13.12□□□□□ -0.31
NPHP4-202ENST00000378161 PDHBP11177 359 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 EVA1CP58658 441 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 LCA5Q86VQ0 697 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 CCDC13Q8IYE1 715 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 KLHDC4Q8TBB5 520 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 MAIP1Q8WWC4 291 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 TEKT1Q969V4 418 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 VCPKMTQ9H867 229 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 MYO1AQ9UBC5 1043 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 ITGB1BP2Q9UKP3 347 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 SMAPO00193 183 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 MAP3K9P80192 1104 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 TEX9Q8N6V9 391 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 PLEKHG4BQ96PX9 1271 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 BLOC1S6Q9UL45 172 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 ZNF711Q9Y462 761 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 RIMS2Q9UQ26 1411 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 TRPM2O94759 1503 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 YY1P25490 414 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 MATR3P43243 847 aaKnown RBP eCLIP13.11□□□□□ -0.31
NPHP4-202ENST00000378161 CCZ1BP86790 482 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 CCZ1P86791 482 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-202ENST00000378161 NFATC2IPQ8NCF5 419 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 ZNF653Q96CK0 615 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 MSH6P52701 1360 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.11□□□□□ -0.31
NPHP4-202ENST00000378161 FANCCQ00597 558 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.11□□□□□ -0.31
NPHP4-202ENST00000378161 PCMTD1Q96MG8 357 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-202ENST00000378161 PHACTR1Q9C0D0 580 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.11□□□□□ -0.31
NPHP4-202ENST00000378161 STK38LQ9Y2H1 464 aa13.11□□□□□ -0.31
NPHP4-202ENST00000378161 CHL1O00533 1208 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 CUL4AQ13619 759 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 TTC39AQ5SRH9 613 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 PAF1Q8N7H5 531 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 LZICQ8WZA0 190 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 CAPZA3Q96KX2 299 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 JADE2Q9NQC1 790 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 CEP126Q9P2H0 1117 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 TTC21AQ8NDW8 1320 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 TRPM1Q7Z4N2 1603 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 MYL1P05976 194 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 GCLCP48506 637 aaPredicted RBP13.1□□□□□ -0.31
NPHP4-202ENST00000378161 HLTFQ14527 1009 aaKnown RBP eCLIP13.1□□□□□ -0.31
NPHP4-202ENST00000378161 E4F1Q66K89 784 aaPredicted RBP13.1□□□□□ -0.31
NPHP4-202ENST00000378161 CCDC174Q6PII3 467 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 TMEM110Q86TL2 294 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 NCAPG2Q86XI2 1143 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 CUL5Q93034 780 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 OPTNQ96CV9 577 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 RANBP17Q9H2T7 1088 aaKnown RBP13.1□□□□□ -0.31
NPHP4-202ENST00000378161 VIPAS39Q9H9C1 493 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 POGZQ7Z3K3 1410 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 MRPS35P82673 323 aaKnown RBP13.1□□□□□ -0.31
NPHP4-202ENST00000378161 KIAA0753Q2KHM9 967 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 PLEKHF1Q96S99 279 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 CWC25Q9NXE8 425 aaPredicted RBP13.1□□□□□ -0.31
NPHP4-202ENST00000378161 SATB2Q9UPW6 733 aa13.1□□□□□ -0.31
NPHP4-202ENST00000378161 SEPT2Q15019 361 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 MYOM2P54296 1465 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 GGCXP38435 758 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 MECOMQ03112 1051 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 ARHGAP18Q8N392 663 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 ATP11CQ8NB49 1132 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 NAA15Q9BXJ9 866 aaKnown RBP13.09□□□□□ -0.31
NPHP4-202ENST00000378161 DDX20Q9UHI6 824 aaKnown RBP13.09□□□□□ -0.31
NPHP4-202ENST00000378161 CORO1CQ9ULV4 474 aaPredicted RBP13.09□□□□□ -0.31
NPHP4-202ENST00000378161 EVI5O60447 810 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 PDHA1P08559 390 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 CNGA1P29973 690 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 AK2P54819 239 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 SLC5A9Q2M3M2 681 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 KCNV1Q6PIU1 500 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 NOD2Q9HC29 1040 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 AP5Z1O43299 807 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 MYO1BO43795 1136 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 GSPT1P15170 499 aaKnown RBP13.09□□□□□ -0.31
NPHP4-202ENST00000378161 MTHFSDQ2M296 383 aaKnown RBP13.09□□□□□ -0.31
NPHP4-202ENST00000378161 CCDC152Q4G0S7 254 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 BEND6Q5SZJ8 279 aaPredicted RBP13.09□□□□□ -0.31
NPHP4-202ENST00000378161 OGFOD1Q8N543 542 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 LRRN4CLQ8ND94 238 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 RPGRIP1Q96KN7 1286 aa13.09□□□□□ -0.31
NPHP4-202ENST00000378161 NAP1L3Q99457 506 aaPredicted RBP13.09□□□□□ -0.31
NPHP4-202ENST00000378161 FTOQ9C0B1 505 aaKnown RBP eCLIP13.09□□□□□ -0.31
NPHP4-202ENST00000378161 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.08□□□□□ -0.32
NPHP4-202ENST00000378161 KRT38O76015 456 aa13.08□□□□□ -0.32
NPHP4-202ENST00000378161 FAM200BP0CF97 657 aa13.08□□□□□ -0.32
NPHP4-202ENST00000378161 DEUP1Q05D60 604 aa13.08□□□□□ -0.32
NPHP4-202ENST00000378161 MPP3Q13368 585 aa13.08□□□□□ -0.32
NPHP4-202ENST00000378161 USHBP1Q8N6Y0 703 aa13.08□□□□□ -0.32
NPHP4-202ENST00000378161 NECAB1Q8N987 351 aa13.08□□□□□ -0.32
NPHP4-202ENST00000378161 P3H4Q92791 437 aa13.08□□□□□ -0.32
NPHP4-202ENST00000378161 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.08□□□□□ -0.324e-7■■■□□ 15.9
NPHP4-202ENST00000378161 CEP131Q9UPN4 1083 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms