RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PPP4R3BQ5MIZ7 849 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 ITPRIPL1Q6GPH6 555 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 SH3BP5LQ7L8J4 393 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 DDX21Q9NR30 783 aaKnown RBP eCLIP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 CEP126Q9P2H0 1117 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 SPDYE3A6NKU9 549 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 KIF2AO00139 706 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 CDC45O75419 566 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 IMPDH2P12268 514 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 IFNA8P32881 189 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 BPIFB4P59827 614 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 GRIN1Q05586 938 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 IFIT5Q13325 482 aaKnown RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 SND1Q7KZF4 910 aaKnown RBP eCLIP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 POTEDQ86YR6 584 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 PLCB1Q9NQ66 1216 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 SELENONQ9NZV5 590 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 CAPN7Q9Y6W3 813 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 FAM170AA1A519 330 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 ZSCAN12O43309 604 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 N4BP1O75113 896 aaKnown RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 KRT2P35908 639 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 KPNA1P52294 538 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 EFCAB2Q5VUJ9 269 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 KAZNQ674X7 775 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 TNIP3Q96KP6 325 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 DACH2Q96NX9 599 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 RPS6KC1Q96S38 1066 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 PANK2Q9BZ23 570 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 HELLSQ9NRZ9 838 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 TRMT1Q9NXH9 659 aaKnown RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 FAF1Q9UNN5 650 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 SLC12A7Q9Y666 1083 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 KRT10P13645 584 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 KIF11P52732 1056 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 SSRP1Q08945 709 aaKnown RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 ESRP1Q6NXG1 681 aaKnown RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 ZNF280CQ8ND82 737 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 CCDC12Q8WUD4 166 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-202ENST00000375405 CENPTQ96BT3 561 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 KIF1BPQ96EK5 621 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 EFCC1Q9HA90 598 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 CTNNA3Q9UI47 895 aa5.13□□□□□ -1.59
SCN1A-202ENST00000375405 GOLGA8CPA6NN73 597 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 CCDC169A6NNP5 214 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 I3L4J1 428 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 ZNF197O14709 1029 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 ARIH2O95376 493 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 DEUP1Q05D60 604 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 ABRQ12979 859 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 PLEKHO1Q53GL0 409 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 CNNM3Q8NE01 707 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 RNASE11Q8TAA1 199 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 SNX19Q92543 992 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 SYNCRIPO60506 623 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 PRPF6O94906 941 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 BAG3O95817 575 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 EEF1B2P24534 225 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 GBP1P32455 592 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 PHBP35232 272 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 UBA7P41226 1012 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 FAPQ12884 760 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 BFSP1Q12934 665 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 ARHGEF6Q15052 776 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 MIIPQ5JXC2 388 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 MAEAQ7L5Y9 396 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 TADA2BQ86TJ2 420 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 AACSQ86V21 672 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 PDZRN3Q9UPQ7 1066 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 IFIT1P09914 478 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 ZSCAN23Q3MJ62 389 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 DCAF17Q5H9S7 520 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 AARS2Q5JTZ9 985 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 RNF219Q5W0B1 726 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 CYB5RLQ6IPT4 315 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 KRT222Q8N1A0 295 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 NLRP4Q96MN2 994 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 EIF3CQ99613 913 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 SMARCAD1Q9H4L7 1026 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 PARVBQ9HBI1 364 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 IPO11Q9UI26 975 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 USTQ9Y2C2 406 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 PRR23D1E9PI22 279 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 RRP9O43818 475 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 GUCA1CO95843 209 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 GNAI2P04899 355 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 GSNP06396 782 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 PRR23D2P0DMB1 279 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 HABP4Q5JVS0 413 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 HDDC2Q7Z4H3 204 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 APLFQ8IW19 511 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 TMTC2Q8N394 836 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 LRGUKQ96M69 825 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 IFIH1Q9BYX4 1025 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 DRC3Q9H069 523 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 STK38LQ9Y2H1 464 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 NUMA1Q14980 2115 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 GFAPP14136 432 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms