RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 DHX58Q96C10 678 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 NFE2L3Q9Y4A8 694 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 MRFAP1Q9Y605 127 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 GPAA1O43292 621 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 ZNF827Q17R98 1081 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 RESP18Q5W5W9 173 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 PROM2Q8N271 834 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 C4AP0C0L4 1744 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 UBR3Q6ZT12 1888 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 TULP2O00295 520 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 APPP05067 770 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 ZAP70P43403 619 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 SCARF1Q14162 830 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 TTLL11Q8NHH1 800 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 APPBP2Q92624 585 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 ANGEL1Q9UNK9 670 aaKnown RBP12.67□□□□□ -0.38
CCDC40-203ENST00000374877 STX10O60499 249 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 CDKL5O76039 1030 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 ZFYP08048 801 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-203ENST00000374877 BMP6P22004 513 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 RFC4P35249 363 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 CCDC57Q2TAC2 916 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 SPECC1LQ69YQ0 1117 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 NFXL1Q6ZNB6 911 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 TC2NQ8N9U0 490 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 GOLGA1Q92805 767 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 XAGE2Q96GT9 111 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 NYXQ9GZU5 481 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 ZMYM6O95789 1325 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 MYL10Q9BUA6 226 aa12.67□□□□□ -0.38
CCDC40-203ENST00000374877 IRX2Q9BZI1 471 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-203ENST00000374877 CUTAO60888 179 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 TICAM2Q86XR7 235 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 MAP3K14Q99558 947 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 LZTFL1Q9NQ48 299 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 FMR1Q06787 632 aaKnown RBP eCLIP12.66□□□□□ -0.38
CCDC40-203ENST00000374877 IFIT5Q13325 482 aaKnown RBP12.66□□□□□ -0.38
CCDC40-203ENST00000374877 MTF1Q14872 753 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 SLC10A5Q5PT55 438 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 AMIGO3Q86WK7 504 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 RABGGTAQ92696 567 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 SENP2Q9HC62 589 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 SRP68Q9UHB9 627 aaKnown RBP12.66□□□□□ -0.38
CCDC40-203ENST00000374877 HOOK1Q9UJC3 728 aaKnown RBP12.66□□□□□ -0.38
CCDC40-203ENST00000374877 UBE2Q2LH0YL09 131 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 MYO1BO43795 1136 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 IARSP41252 1262 aaKnown RBP12.66□□□□□ -0.38
CCDC40-203ENST00000374877 LMAN1P49257 510 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 TBX2Q13207 712 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-203ENST00000374877 TAF7LQ5H9L4 462 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 TBC1D9BQ66K14 1250 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 CYB5R4Q7L1T6 521 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 RSRC2Q7L4I2 434 aaKnown RBP12.66□□□□□ -0.38
CCDC40-203ENST00000374877 KIFC2Q96AC6 838 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 UBXN6Q9BZV1 441 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 MAN1B1Q9UKM7 699 aa12.66□□□□□ -0.38
CCDC40-203ENST00000374877 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.65□□□□□ -0.38
CCDC40-203ENST00000374877 ZSCAN26Q16670 478 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 LONRF2Q1L5Z9 754 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 KRI1Q8N9T8 703 aaKnown RBP12.65□□□□□ -0.38
CCDC40-203ENST00000374877 NKX2-3Q8TAU0 364 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 FUT8Q9BYC5 575 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 PUF60Q9UHX1 559 aaKnown RBP12.65□□□□□ -0.38
CCDC40-203ENST00000374877 LRP5O75197 1615 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 ANKRD18BA2A2Z9 1011 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 B4E1Z4 1266 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 POSTNQ15063 836 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 APOA5Q6Q788 366 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 SYNE4Q8N205 404 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 AKT1S1Q96B36 256 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 SETDB2Q96T68 719 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 TRIM34Q9BYJ4 488 aa12.65□□□□□ -0.38
CCDC40-203ENST00000374877 MRPL44Q9H9J2 332 aaKnown RBP12.65□□□□□ -0.38
CCDC40-203ENST00000374877 GOLGA8AA7E2F4 631 aa12.65□□□□□ -0.39
CCDC40-203ENST00000374877 PRR29P0C7W0 189 aa12.65□□□□□ -0.39
CCDC40-203ENST00000374877 TBC1D10CQ8IV04 446 aa12.65□□□□□ -0.39
CCDC40-203ENST00000374877 GRAMD1CQ8IYS0 662 aa12.65□□□□□ -0.39
CCDC40-203ENST00000374877 CPLX3Q8WVH0 158 aa12.65□□□□□ -0.39
CCDC40-203ENST00000374877 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.65□□□□□ -0.39
CCDC40-203ENST00000374877 SLC26A6Q9BXS9 759 aa12.65□□□□□ -0.39
CCDC40-203ENST00000374877 SAMSN1Q9NSI8 373 aaKnown RBP12.65□□□□□ -0.39
CCDC40-203ENST00000374877 DDX60Q8IY21 1712 aaKnown RBP12.64□□□□□ -0.39
CCDC40-203ENST00000374877 POLR2DO15514 142 aaKnown RBP12.64□□□□□ -0.39
CCDC40-203ENST00000374877 ZBTB43O43298 467 aa12.64□□□□□ -0.39
CCDC40-203ENST00000374877 ATP2B1P20020 1258 aa12.64□□□□□ -0.39
CCDC40-203ENST00000374877 TXLNAP40222 546 aa12.64□□□□□ -0.39
CCDC40-203ENST00000374877 MCM6Q14566 821 aa12.64□□□□□ -0.39
CCDC40-203ENST00000374877 FLAD1Q8NFF5 587 aa12.64□□□□□ -0.39
CCDC40-203ENST00000374877 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.64□□□□□ -0.39
CCDC40-203ENST00000374877 RAI14Q9P0K7 980 aa12.64□□□□□ -0.39
CCDC40-203ENST00000374877 MYH3P11055 1940 aa12.64□□□□□ -0.39
CCDC40-203ENST00000374877 SOWAHDA6NJG2 315 aa12.64□□□□□ -0.39
CCDC40-203ENST00000374877 CCDC175P0C221 793 aa12.64□□□□□ -0.39
CCDC40-203ENST00000374877 CHMP4BP1P59074 171 aa12.64□□□□□ -0.39
CCDC40-203ENST00000374877 SERTAD1Q9UHV2 236 aa12.64□□□□□ -0.39
CCDC40-203ENST00000374877 AKAP2Q9Y2D5 859 aa12.64□□□□□ -0.39
CCDC40-203ENST00000374877 RIC1Q4ADV7 1423 aa12.63□□□□□ -0.39
CCDC40-203ENST00000374877 FAM237AA0A1B0GTK4 181 aa12.63□□□□□ -0.39
CCDC40-203ENST00000374877 SH2B2O14492 632 aaPredicted RBP12.63□□□□□ -0.39
CCDC40-203ENST00000374877 GRIN1Q05586 938 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms