RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SHROOM1Q2M3G4 852 aaPredicted RBP26.29■■□□□ 1.8
CCDC28B-201ENST00000373602 TATDN1Q6P1N9 297 aa26.29■■□□□ 1.8
CCDC28B-201ENST00000373602 CRNKL1Q9BZJ0 848 aaKnown RBP26.29■■□□□ 1.8
CCDC28B-201ENST00000373602 SERPINB13Q9UIV8 391 aa26.29■■□□□ 1.8
CCDC28B-201ENST00000373602 BACE1P56817 501 aa26.28■■□□□ 1.8
CCDC28B-201ENST00000373602 PABPC4Q13310 644 aaKnown RBP eCLIP26.28■■□□□ 1.82e-6■■■■□ 22.3
CCDC28B-201ENST00000373602 RBBP6Q7Z6E9 1792 aaKnown RBP26.28■■□□□ 1.8
CCDC28B-201ENST00000373602 ADD2P35612 726 aa26.27■■□□□ 1.8
CCDC28B-201ENST00000373602 MTMR2Q13614 643 aa26.27■■□□□ 1.8
CCDC28B-201ENST00000373602 MYPNQ86TC9 1320 aa26.27■■□□□ 1.8
CCDC28B-201ENST00000373602 DDX60LQ5H9U9 1706 aaKnown RBP26.26■■□□□ 1.79
CCDC28B-201ENST00000373602 C19orf81C9J6K1 198 aa26.26■■□□□ 1.79
CCDC28B-201ENST00000373602 LCORLQ8N3X6 602 aa26.26■■□□□ 1.79
CCDC28B-201ENST00000373602 SH3TC2Q8TF17 1288 aa26.26■■□□□ 1.79
CCDC28B-201ENST00000373602 TMEM106CQ9BVX2 250 aa26.26■■□□□ 1.79
CCDC28B-201ENST00000373602 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.26■■□□□ 1.79
CCDC28B-201ENST00000373602 KIAA0100Q14667 2235 aaKnown RBP26.26■■□□□ 1.79
CCDC28B-201ENST00000373602 GH2P01242 217 aa26.25■■□□□ 1.79
CCDC28B-201ENST00000373602 POLR3DP05423 398 aaPredicted RBP26.25■■□□□ 1.79
CCDC28B-201ENST00000373602 PLCD1P51178 756 aa26.25■■□□□ 1.79
CCDC28B-201ENST00000373602 RRP1P56182 461 aaKnown RBP26.25■■□□□ 1.79
CCDC28B-201ENST00000373602 ANKRD13CQ8N6S4 541 aa26.25■■□□□ 1.79
CCDC28B-201ENST00000373602 ASCC2Q9H1I8 757 aaPredicted RBP26.25■■□□□ 1.79
CCDC28B-201ENST00000373602 TMOD4Q9NZQ9 345 aa26.25■■□□□ 1.79
CCDC28B-201ENST00000373602 MGAMO43451 1857 aa26.25■■□□□ 1.79
CCDC28B-201ENST00000373602 USP17L10C9JJH3 530 aa26.24■■□□□ 1.79
CCDC28B-201ENST00000373602 GCLCP48506 637 aaPredicted RBP26.24■■□□□ 1.79
CCDC28B-201ENST00000373602 FAM110CQ1W6H9 321 aa26.24■■□□□ 1.79
CCDC28B-201ENST00000373602 RAET1EQ8TD07 263 aa26.24■■□□□ 1.79
CCDC28B-201ENST00000373602 DCP1AQ9NPI6 582 aaPredicted RBP26.24■■□□□ 1.79
CCDC28B-201ENST00000373602 ECHDC1Q9NTX5 307 aa26.24■■□□□ 1.79
CCDC28B-201ENST00000373602 NAV1Q8NEY1 1877 aa26.23■■□□□ 1.79
CCDC28B-201ENST00000373602 PRKCZQ05513 592 aa26.23■■□□□ 1.79
CCDC28B-201ENST00000373602 GABPAQ06546 454 aa26.23■■□□□ 1.79
CCDC28B-201ENST00000373602 SLFNL1Q499Z3 407 aa26.23■■□□□ 1.79
CCDC28B-201ENST00000373602 CERKLQ49MI3 558 aaPredicted RBP26.23■■□□□ 1.79
CCDC28B-201ENST00000373602 SDR42E1Q8WUS8 393 aa26.23■■□□□ 1.79
CCDC28B-201ENST00000373602 ARMT1Q9H993 441 aa26.23■■□□□ 1.79
CCDC28B-201ENST00000373602 MCM9Q9NXL9 1143 aa26.23■■□□□ 1.79
CCDC28B-201ENST00000373602 PCDHB15Q9Y5E8 787 aa26.23■■□□□ 1.79
CCDC28B-201ENST00000373602 EN2P19622 333 aaPredicted RBP26.22■■□□□ 1.79
CCDC28B-201ENST00000373602 HOXA7P31268 230 aaPredicted RBP26.22■■□□□ 1.79
CCDC28B-201ENST00000373602 SHMT1P34896 483 aa26.22■■□□□ 1.79
CCDC28B-201ENST00000373602 UBE3CQ15386 1083 aa26.22■■□□□ 1.79
CCDC28B-201ENST00000373602 GABRQQ9UN88 632 aa26.22■■□□□ 1.79
CCDC28B-201ENST00000373602 PDE4DIPQ5VU43 2346 aa26.21■■□□□ 1.79
CCDC28B-201ENST00000373602 MBD4O95243 580 aa26.21■■□□□ 1.79
CCDC28B-201ENST00000373602 GRK4P32298 578 aa26.21■■□□□ 1.79
CCDC28B-201ENST00000373602 TNPO2O14787 897 aaKnown RBP26.2■■□□□ 1.78
CCDC28B-201ENST00000373602 ABCB5Q2M3G0 1257 aa26.2■■□□□ 1.78
CCDC28B-201ENST00000373602 ZSCAN25Q6NSZ9 544 aa26.2■■□□□ 1.78
CCDC28B-201ENST00000373602 EMILIN3Q9NT22 766 aa26.2■■□□□ 1.78
CCDC28B-201ENST00000373602 MYCP01106 439 aaPredicted RBP26.19■■□□□ 1.78
CCDC28B-201ENST00000373602 CHGBP05060 677 aa26.19■■□□□ 1.78
CCDC28B-201ENST00000373602 IRX3P78415 501 aaPredicted RBP26.19■■□□□ 1.78
CCDC28B-201ENST00000373602 EVX2Q03828 476 aa26.19■■□□□ 1.78
CCDC28B-201ENST00000373602 USP17L2Q6R6M4 530 aa26.19■■□□□ 1.78
CCDC28B-201ENST00000373602 CABP5Q9NP86 173 aa26.19■■□□□ 1.78
CCDC28B-201ENST00000373602 ATP8A2Q9NTI2 1148 aa26.19■■□□□ 1.78
CCDC28B-201ENST00000373602 TNRC18O15417 2968 aaPredicted RBP26.19■■□□□ 1.78
CCDC28B-201ENST00000373602 PRKAB2O43741 272 aa26.18■■□□□ 1.78
CCDC28B-201ENST00000373602 FLT3LGP49771 235 aa26.18■■□□□ 1.78
CCDC28B-201ENST00000373602 RAB3GAP1Q15042 981 aa26.18■■□□□ 1.78
CCDC28B-201ENST00000373602 GPATCH3Q96I76 525 aa26.18■■□□□ 1.78
CCDC28B-201ENST00000373602 C12orf42Q96LP6 360 aa26.18■■□□□ 1.78
CCDC28B-201ENST00000373602 P2RX7Q99572 595 aaKnown RBP26.18■■□□□ 1.78
CCDC28B-201ENST00000373602 MYH7P12883 1935 aa26.18■■□□□ 1.78
CCDC28B-201ENST00000373602 MTFR1Q15390 333 aa26.17■■□□□ 1.78
CCDC28B-201ENST00000373602 SLAIN1Q8ND83 568 aa26.17■■□□□ 1.78
CCDC28B-201ENST00000373602 COA7Q96BR5 231 aa26.17■■□□□ 1.78
CCDC28B-201ENST00000373602 MORF4L1Q9UBU8 362 aa26.17■■□□□ 1.78
CCDC28B-201ENST00000373602 TAOK2Q9UL54 1235 aa26.17■■□□□ 1.78
CCDC28B-201ENST00000373602 CYP2D6P10635 497 aa26.16■■□□□ 1.78
CCDC28B-201ENST00000373602 IRF5Q13568 498 aa26.16■■□□□ 1.78
CCDC28B-201ENST00000373602 YTHDC1Q96MU7 727 aaKnown RBP26.16■■□□□ 1.78
CCDC28B-201ENST00000373602 CENPFP49454 3210 aa26.15■■□□□ 1.78
CCDC28B-201ENST00000373602 GUCY1A2P33402 732 aa26.15■■□□□ 1.78
CCDC28B-201ENST00000373602 USP14P54578 494 aa26.15■■□□□ 1.78
CCDC28B-201ENST00000373602 HERVK_113P62684 666 aa26.15■■□□□ 1.78
CCDC28B-201ENST00000373602 TSHZ3Q63HK5 1081 aa26.15■■□□□ 1.78
CCDC28B-201ENST00000373602 KBTBD3Q8NAB2 608 aa26.15■■□□□ 1.78
CCDC28B-201ENST00000373602 FEZ1Q99689 392 aa26.15■■□□□ 1.78
CCDC28B-201ENST00000373602 KIAA1683Q9H0B3 1180 aa26.15■■□□□ 1.78
CCDC28B-201ENST00000373602 PUS7LQ9H0K6 701 aaKnown RBP26.15■■□□□ 1.78
CCDC28B-201ENST00000373602 SWAP70Q9UH65 585 aa26.15■■□□□ 1.78
CCDC28B-201ENST00000373602 ADCY3O60266 1144 aa26.14■■□□□ 1.78
CCDC28B-201ENST00000373602 UBXN2AP68543 259 aa26.14■■□□□ 1.78
CCDC28B-201ENST00000373602 ACER1Q8TDN7 264 aa26.14■■□□□ 1.78
CCDC28B-201ENST00000373602 PXYLP1Q8TE99 480 aa26.14■■□□□ 1.78
CCDC28B-201ENST00000373602 CRBNQ96SW2 442 aa26.14■■□□□ 1.78
CCDC28B-201ENST00000373602 BIN2Q9UBW5 565 aaPredicted RBP26.14■■□□□ 1.78
CCDC28B-201ENST00000373602 SEPT2Q15019 361 aa26.13■■□□□ 1.77
CCDC28B-201ENST00000373602 ZYXQ15942 572 aaKnown RBP26.13■■□□□ 1.77
CCDC28B-201ENST00000373602 PRPF38BQ5VTL8 546 aaKnown RBP26.13■■□□□ 1.77
CCDC28B-201ENST00000373602 SLC44A5Q8NCS7 719 aa26.13■■□□□ 1.77
CCDC28B-201ENST00000373602 SLC4A4Q9Y6R1 1079 aa26.13■■□□□ 1.77
CCDC28B-201ENST00000373602 DOCK3Q8IZD9 2030 aa26.13■■□□□ 1.77
CCDC28B-201ENST00000373602 CCL5P13501 91 aa26.12■■□□□ 1.77
CCDC28B-201ENST00000373602 C12orf60Q5U649 245 aa26.12■■□□□ 1.77
CCDC28B-201ENST00000373602 GTF3C2Q8WUA4 911 aaPredicted RBP26.12■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms