RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 SIPA1L1O43166 1804 aa12.72□□□□□ -0.37
CLRN3-201ENST00000368671 H0YGN5 161 aa12.71□□□□□ -0.37
CLRN3-201ENST00000368671 ADCY3O60266 1144 aa12.71□□□□□ -0.37
CLRN3-201ENST00000368671 MAP4K4O95819 1239 aaPredicted RBP12.71□□□□□ -0.37
CLRN3-201ENST00000368671 GJB1P08034 283 aa12.71□□□□□ -0.37
CLRN3-201ENST00000368671 ELNP15502 786 aa12.71□□□□□ -0.37
CLRN3-201ENST00000368671 GJA8P48165 433 aa12.71□□□□□ -0.37
CLRN3-201ENST00000368671 FLT3LGP49771 235 aa12.71□□□□□ -0.37
CLRN3-201ENST00000368671 SPP2Q13103 211 aa12.71□□□□□ -0.37
CLRN3-201ENST00000368671 ZKSCAN2Q63HK3 967 aa12.71□□□□□ -0.37
CLRN3-201ENST00000368671 ANKRD13CQ8N6S4 541 aa12.71□□□□□ -0.37
CLRN3-201ENST00000368671 SH3RF3Q8TEJ3 882 aaPredicted RBP12.71□□□□□ -0.37
CLRN3-201ENST00000368671 DPF3Q92784 378 aa12.71□□□□□ -0.37
CLRN3-201ENST00000368671 UNC93B1Q9H1C4 597 aa12.71□□□□□ -0.37
CLRN3-201ENST00000368671 AATFQ9NY61 560 aaKnown RBP eCLIP12.71□□□□□ -0.37
CLRN3-201ENST00000368671 PNMA3Q9UL41 463 aa12.71□□□□□ -0.37
CLRN3-201ENST00000368671 MYO5AQ9Y4I1 1855 aaKnown RBP12.71□□□□□ -0.37
CLRN3-201ENST00000368671 FOCADQ5VW36 1801 aa12.7□□□□□ -0.38
CLRN3-201ENST00000368671 CAP2P40123 477 aa12.7□□□□□ -0.38
CLRN3-201ENST00000368671 RRP1BQ14684 758 aaKnown RBP12.7□□□□□ -0.38
CLRN3-201ENST00000368671 TNNI3KQ59H18 835 aa12.7□□□□□ -0.38
CLRN3-201ENST00000368671 CCDC158Q5M9N0 1113 aa12.7□□□□□ -0.38
CLRN3-201ENST00000368671 NAA16Q6N069 864 aaPredicted RBP12.7□□□□□ -0.38
CLRN3-201ENST00000368671 PROCA1Q8NCQ7 364 aaPredicted RBP12.7□□□□□ -0.38
CLRN3-201ENST00000368671 ZNF280CQ8ND82 737 aa12.7□□□□□ -0.38
CLRN3-201ENST00000368671 DBNDD2Q9BQY9 259 aa12.7□□□□□ -0.38
CLRN3-201ENST00000368671 C1orf115Q9H7X2 142 aa12.7□□□□□ -0.38
CLRN3-201ENST00000368671 FPGT-TNNI3KV9GXZ4 949 aa12.7□□□□□ -0.38
CLRN3-201ENST00000368671 KIAA0100Q14667 2235 aaKnown RBP12.69□□□□□ -0.38
CLRN3-201ENST00000368671 USP17L5A8MUK1 530 aa12.69□□□□□ -0.38
CLRN3-201ENST00000368671 SURF6O75683 361 aaKnown RBP12.69□□□□□ -0.38
CLRN3-201ENST00000368671 BAG3O95817 575 aa12.69□□□□□ -0.38
CLRN3-201ENST00000368671 INHAP05111 366 aa12.69□□□□□ -0.38
CLRN3-201ENST00000368671 FXR1P51114 621 aaKnown RBP eCLIP12.69□□□□□ -0.38
CLRN3-201ENST00000368671 HMGCS2P54868 508 aa12.69□□□□□ -0.38
CLRN3-201ENST00000368671 U2AF1L4Q8WU68 220 aaKnown RBP12.69□□□□□ -0.38
CLRN3-201ENST00000368671 COA7Q96BR5 231 aa12.69□□□□□ -0.38
CLRN3-201ENST00000368671 TBC1D2Q9BYX2 928 aa12.69□□□□□ -0.38
CLRN3-201ENST00000368671 AS3MTQ9HBK9 375 aa12.69□□□□□ -0.38
CLRN3-201ENST00000368671 CENPFP49454 3210 aa12.69□□□□□ -0.38
CLRN3-201ENST00000368671 PPP1R37O75864 691 aa12.68□□□□□ -0.38
CLRN3-201ENST00000368671 FARP2O94887 1054 aaPredicted RBP12.68□□□□□ -0.38
CLRN3-201ENST00000368671 ATP8B2P98198 1209 aa12.68□□□□□ -0.38
CLRN3-201ENST00000368671 PABPC4Q13310 644 aaKnown RBP eCLIP12.68□□□□□ -0.38
CLRN3-201ENST00000368671 IRF5Q13568 498 aa12.68□□□□□ -0.38
CLRN3-201ENST00000368671 FAM110CQ1W6H9 321 aa12.68□□□□□ -0.38
CLRN3-201ENST00000368671 MAPKAPK5Q8IW41 473 aa12.68□□□□□ -0.38
CLRN3-201ENST00000368671 PXYLP1Q8TE99 480 aa12.68□□□□□ -0.38
CLRN3-201ENST00000368671 TGFBRAP1Q8WUH2 860 aa12.68□□□□□ -0.38
CLRN3-201ENST00000368671 BBXQ8WY36 941 aaPredicted RBP12.68□□□□□ -0.38
CLRN3-201ENST00000368671 HTATIP2Q9BUP3 242 aa12.68□□□□□ -0.38
CLRN3-201ENST00000368671 GPR108Q9NPR9 543 aa12.68□□□□□ -0.38
CLRN3-201ENST00000368671 PI4KBQ9UBF8 816 aa12.68□□□□□ -0.38
CLRN3-201ENST00000368671 HERC5Q9UII4 1024 aaKnown RBP12.68□□□□□ -0.38
CLRN3-201ENST00000368671 GTPBP6O43824 516 aaPredicted RBP12.67□□□□□ -0.38
CLRN3-201ENST00000368671 SGPL1O95470 568 aa12.67□□□□□ -0.38
CLRN3-201ENST00000368671 CYP2E1P05181 493 aaPredicted RBP12.67□□□□□ -0.38
CLRN3-201ENST00000368671 ZAP70P43403 619 aa12.67□□□□□ -0.38
CLRN3-201ENST00000368671 ADGRA1Q86SQ6 560 aa12.67□□□□□ -0.38
CLRN3-201ENST00000368671 FTSJ3Q8IY81 847 aaKnown RBP12.67□□□□□ -0.38
CLRN3-201ENST00000368671 CRACR2BQ8N4Y2 399 aaPredicted RBP12.67□□□□□ -0.38
CLRN3-201ENST00000368671 SSH3Q8TE77 659 aa12.67□□□□□ -0.38
CLRN3-201ENST00000368671 TRIM34Q9BYJ4 488 aa12.67□□□□□ -0.38
CLRN3-201ENST00000368671 DHX36Q9H2U1 1008 aaKnown RBP12.67□□□□□ -0.38
CLRN3-201ENST00000368671 FLT1P17948 1338 aa12.66□□□□□ -0.38
CLRN3-201ENST00000368671 GDF11O95390 407 aa12.66□□□□□ -0.38
CLRN3-201ENST00000368671 TFRCP02786 760 aaKnown RBP12.66□□□□□ -0.38
CLRN3-201ENST00000368671 GCLCP48506 637 aaPredicted RBP12.66□□□□□ -0.38
CLRN3-201ENST00000368671 HNRNPUQ00839 825 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLRN3-201ENST00000368671 MTMR2Q13614 643 aa12.66□□□□□ -0.38
CLRN3-201ENST00000368671 SH3D19Q5HYK7 790 aa12.66□□□□□ -0.38
CLRN3-201ENST00000368671 UBE2Q1Q7Z7E8 422 aa12.66□□□□□ -0.38
CLRN3-201ENST00000368671 ITPRIPQ8IWB1 547 aa12.66□□□□□ -0.38
CLRN3-201ENST00000368671 DEFB118Q96PH6 123 aa12.66□□□□□ -0.38
CLRN3-201ENST00000368671 CCDC8Q9H0W5 538 aaPredicted RBP12.66□□□□□ -0.38
CLRN3-201ENST00000368671 ASCC2Q9H1I8 757 aaPredicted RBP12.66□□□□□ -0.38
CLRN3-201ENST00000368671 PIH1D3Q9NQM4 214 aaKnown RBP12.66□□□□□ -0.38
CLRN3-201ENST00000368671 TLR7Q9NYK1 1049 aaKnown RBP12.66□□□□□ -0.38
CLRN3-201ENST00000368671 SAP30BPQ9UHR5 308 aaKnown RBP12.66□□□□□ -0.38
CLRN3-201ENST00000368671 BRCA2P51587 3418 aa12.66□□□□□ -0.38
CLRN3-201ENST00000368671 MYH1P12882 1939 aa12.65□□□□□ -0.38
CLRN3-201ENST00000368671 PPP4CP60510 307 aa12.65□□□□□ -0.38
CLRN3-201ENST00000368671 DYNLL1P63167 89 aaKnown RBP12.65□□□□□ -0.38
CLRN3-201ENST00000368671 IRX3P78415 501 aaPredicted RBP12.65□□□□□ -0.38
CLRN3-201ENST00000368671 JAG1P78504 1218 aa12.65□□□□□ -0.38
CLRN3-201ENST00000368671 SHROOM1Q2M3G4 852 aaPredicted RBP12.65□□□□□ -0.38
CLRN3-201ENST00000368671 DNAJC18Q9H819 358 aa12.65□□□□□ -0.38
CLRN3-201ENST00000368671 TMOD4Q9NZQ9 345 aa12.65□□□□□ -0.38
CLRN3-201ENST00000368671 DBNLQ9UJU6 430 aaKnown RBP12.65□□□□□ -0.38
CLRN3-201ENST00000368671 PALD1Q9ULE6 856 aa12.65□□□□□ -0.38
CLRN3-201ENST00000368671 PLXNB2O15031 1838 aa12.65□□□□□ -0.39
CLRN3-201ENST00000368671 MKI67P46013 3256 aaKnown RBP12.64□□□□□ -0.39
CLRN3-201ENST00000368671 IDH1O75874 414 aaKnown RBP12.64□□□□□ -0.39
CLRN3-201ENST00000368671 HLA-DOAP06340 250 aa12.64□□□□□ -0.39
CLRN3-201ENST00000368671 ASNSP08243 561 aa12.64□□□□□ -0.39
CLRN3-201ENST00000368671 CYP7A1P22680 504 aa12.64□□□□□ -0.39
CLRN3-201ENST00000368671 FOXP4Q8IVH2 680 aaPredicted RBP12.64□□□□□ -0.39
CLRN3-201ENST00000368671 ZNF512BQ96KM6 892 aaPredicted RBP12.64□□□□□ -0.39
CLRN3-201ENST00000368671 WDR18Q9BV38 432 aa12.64□□□□□ -0.39
CLRN3-201ENST00000368671 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms