RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 IFT74Q96LB3 600 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 R3HDM1Q15032 1099 aaKnown RBP8.22□□□□□ -1.09
VPS13A-202ENST00000357409 ADD1P35611 737 aaKnown RBP8.22□□□□□ -1.09
VPS13A-202ENST00000357409 CERKLQ49MI3 558 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-202ENST00000357409 TNNI3KQ59H18 835 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 GREM2Q9H772 168 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 SMYD2Q9NRG4 433 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 FPGT-TNNI3KV9GXZ4 949 aa8.22□□□□□ -1.09
VPS13A-202ENST00000357409 LRRIQ4A6NIV6 560 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 CLGNO14967 610 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 ZNF827Q17R98 1081 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 CFAP157Q5JU67 520 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 GLYCTKQ8IVS8 523 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 GANCQ8TET4 914 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 OLA1Q9NTK5 396 aaKnown RBP8.21□□□□□ -1.09
VPS13A-202ENST00000357409 RTL1A6NKG5 1358 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 CABP7Q86V35 215 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 SYNE4Q8N205 404 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 SH2B1Q9NRF2 756 aaPredicted RBP8.21□□□□□ -1.09
VPS13A-202ENST00000357409 ANKRD13CQ8N6S4 541 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 ANKRD42Q8N9B4 389 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 CCDC110Q8TBZ0 833 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 SMCO2A6NFE2 343 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 EXOC3O60645 756 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 PSMD2Q13200 908 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 ERFEQ4G0M1 354 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 KCTD17Q8N5Z5 321 aa8.21□□□□□ -1.09
VPS13A-202ENST00000357409 SRGAP2CP0DJJ0 459 aa8.21□□□□□ -1.1
VPS13A-202ENST00000357409 RUFY3Q7L099 469 aa8.21□□□□□ -1.1
VPS13A-202ENST00000357409 CYP2D7A0A087X1C5 515 aa8.21□□□□□ -1.1
VPS13A-202ENST00000357409 XRCC6P12956 609 aaKnown RBP eCLIP8.21□□□□□ -1.1
VPS13A-202ENST00000357409 CKAP4Q07065 602 aaKnown RBP8.21□□□□□ -1.1
VPS13A-202ENST00000357409 DCUN1D2Q6PH85 259 aa8.21□□□□□ -1.1
VPS13A-202ENST00000357409 NLRX1Q86UT6 975 aa8.21□□□□□ -1.1
VPS13A-202ENST00000357409 SERTAD1Q9UHV2 236 aa8.21□□□□□ -1.1
VPS13A-202ENST00000357409 PLEKHH2Q8IVE3 1493 aa8.21□□□□□ -1.1
VPS13A-202ENST00000357409 GADD45BO75293 160 aaPredicted RBP8.21□□□□□ -1.1
VPS13A-202ENST00000357409 UBE2SQ16763 222 aa8.21□□□□□ -1.1
VPS13A-202ENST00000357409 ABI1Q8IZP0 508 aa8.21□□□□□ -1.1
VPS13A-202ENST00000357409 FAM207AQ9NSI2 230 aaPredicted RBP8.21□□□□□ -1.1
VPS13A-202ENST00000357409 G3BP2Q9UN86 482 aaKnown RBP8.21□□□□□ -1.1
VPS13A-202ENST00000357409 TNRQ92752 1358 aa8.21□□□□□ -1.1
VPS13A-202ENST00000357409 CDC26Q8NHZ8 85 aa8.21□□□□□ -1.1
VPS13A-202ENST00000357409 CNNM2Q9H8M5 875 aa8.21□□□□□ -1.1
VPS13A-202ENST00000357409 SEPT9Q9UHD8 586 aaPredicted RBP8.21□□□□□ -1.1
VPS13A-202ENST00000357409 GOLGA8IPA6NC78 632 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 GOLGA8JA6NMD2 632 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 CUL4BQ13620 913 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 SLC27A2O14975 620 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 ADKP55263 362 aaKnown RBP8.2□□□□□ -1.1
VPS13A-202ENST00000357409 DIS3L2Q8IYB7 885 aaKnown RBP8.2□□□□□ -1.1
VPS13A-202ENST00000357409 RIOK3O14730 519 aaKnown RBP8.2□□□□□ -1.1
VPS13A-202ENST00000357409 EPB41P11171 864 aaKnown RBP8.2□□□□□ -1.1
VPS13A-202ENST00000357409 TMOD1P28289 359 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 UBE2HP62256 183 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 SNX1Q13596 522 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 NXNQ6DKJ4 435 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 KANK3Q6NY19 840 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 GIGYF2Q6Y7W6 1299 aaKnown RBP8.2□□□□□ -1.1
VPS13A-202ENST00000357409 TMTC2Q8N394 836 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 PIK3R2O00459 728 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 F13A1P00488 732 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 MRPS27Q92552 414 aaKnown RBP8.2□□□□□ -1.1
VPS13A-202ENST00000357409 ANTXR1Q9H6X2 564 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 STK24Q9Y6E0 443 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 OATP04181 439 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 CASP2P42575 452 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 CACNB2Q08289 660 aaPredicted RBP8.2□□□□□ -1.1
VPS13A-202ENST00000357409 TTBK2Q6IQ55 1244 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 DAAM2Q86T65 1068 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 TSC1Q92574 1164 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 DDX19AQ9NUU7 478 aaKnown RBP8.2□□□□□ -1.1
VPS13A-202ENST00000357409 ARAP1Q96P48 1450 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 TXNDC9O14530 226 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 HP1BP3Q5SSJ5 553 aaPredicted RBP8.2□□□□□ -1.1
VPS13A-202ENST00000357409 PLCH2O75038 1416 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 FAM114A1Q8IWE2 563 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 PRKAG2Q9UGJ0 569 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 DEPTORQ8TB45 409 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 ANKRD2Q9GZV1 360 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 PTPN22Q9Y2R2 807 aa8.2□□□□□ -1.1
VPS13A-202ENST00000357409 BTDP43251 543 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 MRPS25P82663 173 aaKnown RBP8.19□□□□□ -1.1
VPS13A-202ENST00000357409 NUCB1Q02818 461 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 RNASELQ05823 741 aaKnown RBP8.19□□□□□ -1.1
VPS13A-202ENST00000357409 GOLGA1Q92805 767 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 ADORA1P30542 326 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 MRPL12P52815 198 aaKnown RBP8.19□□□□□ -1.1
VPS13A-202ENST00000357409 PNOCQ13519 176 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 MTERF2Q49AM1 385 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 PI16Q6UXB8 463 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 SPATA5Q8NB90 893 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 GNAQP50148 359 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 DISC1Q9NRI5 854 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 LRWD1Q9UFC0 647 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.19□□□□□ -1.1
VPS13A-202ENST00000357409 TYW1BQ6NUM6 668 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 NME8Q8N427 588 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 CSGALNACT2Q8N6G5 542 aa8.19□□□□□ -1.1
VPS13A-202ENST00000357409 SLC39A2Q9NP94 309 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms