RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 PAXIP1Q6ZW49 1069 aaPredicted RBP26.32■■□□□ 1.8
SHMT1-203ENST00000354098 CCDC84Q86UT8 332 aaPredicted RBP26.32■■□□□ 1.8
SHMT1-203ENST00000354098 TAOK2Q9UL54 1235 aa26.32■■□□□ 1.8
SHMT1-203ENST00000354098 CYP21A2P08686 494 aa26.31■■□□□ 1.8
SHMT1-203ENST00000354098 AKR1B1P15121 316 aa26.31■■□□□ 1.8
SHMT1-203ENST00000354098 PDE4BQ07343 736 aa26.31■■□□□ 1.8
SHMT1-203ENST00000354098 DDX52Q9Y2R4 599 aaKnown RBP eCLIP26.31■■□□□ 1.8
SHMT1-203ENST00000354098 TAF6LQ9Y6J9 622 aa26.31■■□□□ 1.8
SHMT1-203ENST00000354098 GH2P01242 217 aa26.31■■□□□ 1.8
SHMT1-203ENST00000354098 GRM1Q13255 1194 aa26.31■■□□□ 1.8
SHMT1-203ENST00000354098 ABCB5Q2M3G0 1257 aa26.31■■□□□ 1.8
SHMT1-203ENST00000354098 C8orf34Q49A92 452 aa26.31■■□□□ 1.8
SHMT1-203ENST00000354098 RASAL3Q86YV0 1011 aa26.31■■□□□ 1.8
SHMT1-203ENST00000354098 PICK1Q9NRD5 415 aa26.31■■□□□ 1.8
SHMT1-203ENST00000354098 FGRP09769 529 aa26.3■■□□□ 1.8
SHMT1-203ENST00000354098 PTPRAP18433 802 aa26.3■■□□□ 1.8
SHMT1-203ENST00000354098 GJA5P36382 358 aa26.3■■□□□ 1.8
SHMT1-203ENST00000354098 NECTIN1Q15223 517 aa26.3■■□□□ 1.8
SHMT1-203ENST00000354098 AKNAD1Q5T1N1 836 aa26.3■■□□□ 1.8
SHMT1-203ENST00000354098 OPTNQ96CV9 577 aa26.3■■□□□ 1.8
SHMT1-203ENST00000354098 ZBTB21Q9ULJ3 1066 aa26.3■■□□□ 1.8
SHMT1-203ENST00000354098 FAM155AB1AL88 458 aaPredicted RBP26.29■■□□□ 1.8
SHMT1-203ENST00000354098 MPHOSPH10O00566 681 aaKnown RBP26.29■■□□□ 1.8
SHMT1-203ENST00000354098 REC8O95072 547 aa26.29■■□□□ 1.8
SHMT1-203ENST00000354098 MKRN3Q13064 507 aaKnown RBP26.29■■□□□ 1.8
SHMT1-203ENST00000354098 NKX2-3Q8TAU0 364 aa26.29■■□□□ 1.8
SHMT1-203ENST00000354098 OTUD5Q96G74 571 aa26.29■■□□□ 1.8
SHMT1-203ENST00000354098 ZNF287Q9HBT7 754 aa26.29■■□□□ 1.8
SHMT1-203ENST00000354098 LAMA4Q16363 1823 aa26.29■■□□□ 1.8
SHMT1-203ENST00000354098 DOCK1Q14185 1865 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 SPDYE5A6NIY4 337 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 GUCY1A2P33402 732 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 ERO1BQ86YB8 467 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 ZNF444Q8N0Y2 327 aaPredicted RBP26.28■■□□□ 1.8
SHMT1-203ENST00000354098 STAG1Q8WVM7 1258 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 SEC24BO95487 1268 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 ASNSP08243 561 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 SLC10A3P09131 477 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 FAM47AQ5JRC9 791 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 MFSD6Q6ZSS7 791 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 WNK4Q96J92 1243 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 CAPNS2Q96L46 248 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 CCDC17Q96LX7 622 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 TOMM22Q9NS69 142 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 ZHX2Q9Y6X8 837 aa26.28■■□□□ 1.8
SHMT1-203ENST00000354098 ATAD5Q96QE3 1844 aa26.27■■□□□ 1.8
SHMT1-203ENST00000354098 SLC27A2O14975 620 aa26.27■■□□□ 1.8
SHMT1-203ENST00000354098 RAB3GAP1Q15042 981 aa26.27■■□□□ 1.8
SHMT1-203ENST00000354098 RRP12Q5JTH9 1297 aaKnown RBP26.27■■□□□ 1.8
SHMT1-203ENST00000354098 SPRYD7Q5W111 196 aa26.27■■□□□ 1.8
SHMT1-203ENST00000354098 CREB3L3Q68CJ9 461 aa26.27■■□□□ 1.8
SHMT1-203ENST00000354098 CCDC102AQ96A19 550 aa26.27■■□□□ 1.8
SHMT1-203ENST00000354098 CABP5Q9NP86 173 aa26.27■■□□□ 1.8
SHMT1-203ENST00000354098 NEDD4P46934 1319 aa26.27■■□□□ 1.8
SHMT1-203ENST00000354098 ORC4O43929 436 aa26.26■■□□□ 1.79
SHMT1-203ENST00000354098 VEGFBP49765 207 aa26.26■■□□□ 1.79
SHMT1-203ENST00000354098 SEPT2Q15019 361 aa26.26■■□□□ 1.79
SHMT1-203ENST00000354098 GNL3Q9BVP2 549 aaKnown RBP eCLIP26.26■■□□□ 1.79
SHMT1-203ENST00000354098 MYH8P13535 1937 aa26.26■■□□□ 1.79
SHMT1-203ENST00000354098 PPATQ06203 517 aa26.25■■□□□ 1.79
SHMT1-203ENST00000354098 USP26Q9BXU7 913 aa26.25■■□□□ 1.79
SHMT1-203ENST00000354098 RNF41Q9H4P4 317 aaPredicted RBP26.25■■□□□ 1.79
SHMT1-203ENST00000354098 USP17L5A8MUK1 530 aa26.25■■□□□ 1.79
SHMT1-203ENST00000354098 IRF6O14896 467 aa26.25■■□□□ 1.79
SHMT1-203ENST00000354098 RANBP6O60518 1105 aaKnown RBP26.25■■□□□ 1.79
SHMT1-203ENST00000354098 TFAP4Q01664 338 aa26.25■■□□□ 1.79
SHMT1-203ENST00000354098 STOX1Q6ZVD7 989 aa26.25■■□□□ 1.79
SHMT1-203ENST00000354098 CLEC10AQ8IUN9 316 aa26.25■■□□□ 1.79
SHMT1-203ENST00000354098 ZIC5Q96T25 663 aa26.25■■□□□ 1.79
SHMT1-203ENST00000354098 GINM1Q9NU53 330 aa26.25■■□□□ 1.79
SHMT1-203ENST00000354098 TMEM179Q6ZVK1 233 aa26.24■■□□□ 1.79
SHMT1-203ENST00000354098 AFG3L2Q9Y4W6 797 aa26.24■■□□□ 1.79
SHMT1-203ENST00000354098 WDR33Q9C0J8 1336 aaKnown RBP26.24■■□□□ 1.79
SHMT1-203ENST00000354098 E7EWF7 191 aa26.23■■□□□ 1.79
SHMT1-203ENST00000354098 AOC2O75106 756 aa26.23■■□□□ 1.79
SHMT1-203ENST00000354098 PCP11498 1178 aaKnown RBP26.23■■□□□ 1.79
SHMT1-203ENST00000354098 PPIL2Q13356 520 aa26.23■■□□□ 1.79
SHMT1-203ENST00000354098 TSPY3P0CV98 308 aa26.22■■□□□ 1.79
SHMT1-203ENST00000354098 TSPY8P0CW00 308 aa26.22■■□□□ 1.79
SHMT1-203ENST00000354098 ZBTB48P10074 688 aaPredicted RBP26.22■■□□□ 1.79
SHMT1-203ENST00000354098 ECE1P42892 770 aa26.22■■□□□ 1.79
SHMT1-203ENST00000354098 RASEFQ8IZ41 740 aa26.22■■□□□ 1.79
SHMT1-203ENST00000354098 DNAJC5GQ8N7S2 189 aa26.22■■□□□ 1.79
SHMT1-203ENST00000354098 TSPY2A6NKD2 308 aa26.22■■□□□ 1.79
SHMT1-203ENST00000354098 B4E1Z4 1266 aa26.22■■□□□ 1.79
SHMT1-203ENST00000354098 HSPA4P34932 840 aa26.22■■□□□ 1.79
SHMT1-203ENST00000354098 SPP2Q13103 211 aa26.22■■□□□ 1.79
SHMT1-203ENST00000354098 NEDD1Q8NHV4 660 aa26.22■■□□□ 1.79
SHMT1-203ENST00000354098 PHIPQ8WWQ0 1821 aa26.21■■□□□ 1.79
SHMT1-203ENST00000354098 TRIM75PA6NK02 468 aa26.21■■□□□ 1.79
SHMT1-203ENST00000354098 SIAH1Q8IUQ4 282 aa26.21■■□□□ 1.79
SHMT1-203ENST00000354098 ZNF280CQ8ND82 737 aa26.21■■□□□ 1.79
SHMT1-203ENST00000354098 NMT2O60551 498 aa26.2■■□□□ 1.78
SHMT1-203ENST00000354098 KDM4AO75164 1064 aa26.2■■□□□ 1.78
SHMT1-203ENST00000354098 RNF20Q5VTR2 975 aa26.2■■□□□ 1.78
SHMT1-203ENST00000354098 ACER1Q8TDN7 264 aa26.2■■□□□ 1.78
SHMT1-203ENST00000354098 CEP350Q5VT06 3117 aa26.2■■□□□ 1.78
SHMT1-203ENST00000354098 IGKV6D-41A0A0C4DH26 115 aa26.19■■□□□ 1.78
SHMT1-203ENST00000354098 EPB41L2O43491 1005 aaKnown RBP26.19■■□□□ 1.78
SHMT1-203ENST00000354098 ESR2Q92731 530 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms