RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 BHMT2Q9H2M3 363 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 ADGRL3Q9HAR2 1447 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 GMNNO75496 209 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 PPP1R2P41236 205 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 C8orf34Q49A92 452 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 PPP1R2P3Q6NXS1 205 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 PDE11AQ9HCR9 933 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 CLIP2Q9UDT6 1046 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 GNAI3P08754 354 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 ME1P48163 572 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 ARHGAP29Q52LW3 1261 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 SNX1Q13596 522 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 CCDC51Q96ER9 411 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 MPHOSPH6Q99547 160 aaKnown RBP3.97□□□□□ -1.77
SYNE1-201ENST00000341594 SPATS2LQ9NUQ6 558 aaKnown RBP3.97□□□□□ -1.77
SYNE1-201ENST00000341594 CWC25Q9NXE8 425 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-201ENST00000341594 EBAG9O00559 213 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 HMGB2P26583 209 aaKnown RBP3.97□□□□□ -1.77
SYNE1-201ENST00000341594 YTHDF3Q7Z739 585 aaKnown RBP3.97□□□□□ -1.77
SYNE1-201ENST00000341594 GSPT2Q8IYD1 628 aaKnown RBP3.97□□□□□ -1.77
SYNE1-201ENST00000341594 CLIC6Q96NY7 704 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 VPS16Q9H269 839 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 C9orf78Q9NZ63 289 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-201ENST00000341594 RABGAP1Q9Y3P9 1069 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 TRPM6Q9BX84 2022 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 SCN11AQ9UI33 1791 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 ZKSCAN1P17029 563 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-201ENST00000341594 IRX4P78413 519 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 USP4Q13107 963 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 PPP2R5DQ14738 602 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 PDE4DIPQ5VU43 2346 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 BAG2O95816 211 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 POLKQ9UBT6 870 aa3.97□□□□□ -1.77
SYNE1-201ENST00000341594 A0A0G2JLW4 131 aa3.96□□□□□ -1.77
SYNE1-201ENST00000341594 NUCB1Q02818 461 aa3.96□□□□□ -1.77
SYNE1-201ENST00000341594 GABPB2Q8TAK5 448 aaPredicted RBP3.96□□□□□ -1.77
SYNE1-201ENST00000341594 CDK12Q9NYV4 1490 aaPredicted RBP3.96□□□□□ -1.77
SYNE1-201ENST00000341594 ERC2O15083 957 aa3.96□□□□□ -1.77
SYNE1-201ENST00000341594 RGL2O15211 777 aa3.96□□□□□ -1.77
SYNE1-201ENST00000341594 PRAG1Q86YV5 1406 aa3.96□□□□□ -1.77
SYNE1-201ENST00000341594 ARHGEF1Q92888 912 aaKnown RBP3.96□□□□□ -1.77
SYNE1-201ENST00000341594 IKBKGQ9Y6K9 419 aa3.96□□□□□ -1.77
SYNE1-201ENST00000341594 A0A087WUV0 522 aaPredicted RBP3.96□□□□□ -1.77
SYNE1-201ENST00000341594 C8orf58Q8NAV2 365 aa3.96□□□□□ -1.77
SYNE1-201ENST00000341594 CLNS1AP54105 237 aaKnown RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 CRYMQ14894 314 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 PSMD6Q15008 389 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 JPH2Q9BR39 696 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 ERLIN2O94905 339 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 A0A1B0GVL5 298 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 NOP2P46087 812 aaKnown RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 ALS2CLQ60I27 953 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 CCDC73Q6ZRK6 1079 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 PRR23BQ6ZRT6 265 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 TSPAN18Q96SJ8 248 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 POLE2P56282 527 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 GUCY2CP25092 1073 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 LSM14AQ8ND56 463 aaKnown RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 FANCAO15360 1455 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 AMPHP49418 695 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 CHD1LQ86WJ1 897 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 CTAGE1Q96RT6 745 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 CFDP1Q9UEE9 299 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 HNRNPCL1O60812 293 aaKnown RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 PPFIA1Q13136 1202 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 MTA3Q9BTC8 594 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 DOCK5Q9H7D0 1870 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 MPP4Q96JB8 637 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 HYOU1Q9Y4L1 999 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 DOCK4Q8N1I0 1966 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 SMIM24O75264 130 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 LUC7L3O95232 432 aaKnown RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 CARTPTQ16568 116 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 MYL10Q9BUA6 226 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 HEATR5BQ9P2D3 2071 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 ATXN3P54252 364 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 KRT85P78386 507 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 IMMTQ16891 758 aaKnown RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 MKL1Q969V6 931 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 RPL26L1Q9UNX3 145 aaKnown RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 ALPK3Q96L96 1907 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 A0A0U1RQJ8 604 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 GOLGA8HP0CJ92 632 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 USP37Q86T82 979 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 KLHL7Q8IXQ5 586 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 STMN4Q9H169 189 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 PTPRTO14522 1441 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 CPSF1Q10570 1443 aaKnown RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 MAGI2Q86UL8 1455 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 MYBPC2Q14324 1141 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 ZNF396Q96N95 335 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 FAM133BQ5BKY9 247 aaKnown RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 PPP1R12CQ9BZL4 782 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 ARHGEF28Q8N1W1 1705 aaKnown RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 KYNUQ16719 465 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 CCDC178Q5BJE1 867 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 KIAA1524Q8TCG1 905 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 WHAMMQ8TF30 809 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 BMP15O95972 392 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms