RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 STK36Q9NRP7 1315 aa15.59■□□□□ 0.09
HMGB1-202ENST00000339872 CRKP46108 304 aa15.59■□□□□ 0.09
HMGB1-202ENST00000339872 GRIPAP1Q4V328 841 aa15.59■□□□□ 0.09
HMGB1-202ENST00000339872 TTC6Q86TZ1 520 aa15.59■□□□□ 0.09
HMGB1-202ENST00000339872 SCAND2PQ9GZW5 306 aaPredicted RBP15.59■□□□□ 0.09
HMGB1-202ENST00000339872 USP40Q9NVE5 1235 aa15.59■□□□□ 0.09
HMGB1-202ENST00000339872 FMNL1O95466 1100 aaPredicted RBP15.58■□□□□ 0.08
HMGB1-202ENST00000339872 POLD1P28340 1107 aa15.58■□□□□ 0.08
HMGB1-202ENST00000339872 NT5C2P49902 561 aa15.58■□□□□ 0.08
HMGB1-202ENST00000339872 ZNF444Q8N0Y2 327 aaPredicted RBP15.58■□□□□ 0.08
HMGB1-202ENST00000339872 CMTR1Q8N1G2 835 aaKnown RBP15.58■□□□□ 0.08
HMGB1-202ENST00000339872 MTFR1LQ9H019 292 aa15.58■□□□□ 0.08
HMGB1-202ENST00000339872 ZNF287Q9HBT7 754 aa15.58■□□□□ 0.08
HMGB1-202ENST00000339872 TMEM63CQ9P1W3 806 aa15.58■□□□□ 0.08
HMGB1-202ENST00000339872 MYH8P13535 1937 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 TSPY3P0CV98 308 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 TSPY8P0CW00 308 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 ZSCAN23Q3MJ62 389 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 C16orf86Q6ZW13 317 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 TRIM22Q8IYM9 498 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 CCDC82Q8N4S0 544 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 SPATA32Q96LK8 384 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 UBE2Q2LH0YL09 131 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 WDHD1O75717 1129 aaPredicted RBP15.57■□□□□ 0.08
HMGB1-202ENST00000339872 DDAH1O94760 285 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 CALM1P0DP23 149 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 CALM2P0DP24 149 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 CALM3P0DP25 149 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 CDK8P49336 464 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 R3HDM1Q15032 1099 aaKnown RBP15.57■□□□□ 0.08
HMGB1-202ENST00000339872 APOBEC3HQ6NTF7 200 aaKnown RBP15.57■□□□□ 0.08
HMGB1-202ENST00000339872 CDC42EP5Q6NZY7 148 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 PSMD1Q99460 953 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 DDX4Q9NQI0 724 aaKnown RBP15.57■□□□□ 0.08
HMGB1-202ENST00000339872 ELP1O95163 1332 aa15.57■□□□□ 0.08
HMGB1-202ENST00000339872 GOLGA6L3A6NEY3 463 aa15.56■□□□□ 0.08
HMGB1-202ENST00000339872 YDJCA8MPS7 323 aa15.56■□□□□ 0.08
HMGB1-202ENST00000339872 RASA1P20936 1047 aa15.56■□□□□ 0.08
HMGB1-202ENST00000339872 RBM5P52756 815 aaKnown RBP eCLIP15.56■□□□□ 0.08
HMGB1-202ENST00000339872 TROAPQ12815 778 aa15.56■□□□□ 0.08
HMGB1-202ENST00000339872 PPP2R5BQ15173 497 aa15.56■□□□□ 0.08
HMGB1-202ENST00000339872 ILDR1Q86SU0 546 aaPredicted RBP15.56■□□□□ 0.08
HMGB1-202ENST00000339872 LEO1Q8WVC0 666 aaPredicted RBP15.56■□□□□ 0.08
HMGB1-202ENST00000339872 ZDHHC15Q96MV8 337 aa15.56■□□□□ 0.08
HMGB1-202ENST00000339872 IL17RBQ9NRM6 502 aa15.56■□□□□ 0.08
HMGB1-202ENST00000339872 RCSD1Q6JBY9 416 aa15.56■□□□□ 0.08
HMGB1-202ENST00000339872 NBPF11Q86T75 865 aa15.56■□□□□ 0.08
HMGB1-202ENST00000339872 CRACR2BQ8N4Y2 399 aaPredicted RBP15.56■□□□□ 0.08
HMGB1-202ENST00000339872 WASF1Q92558 559 aa15.56■□□□□ 0.08
HMGB1-202ENST00000339872 CFAP45Q9UL16 551 aa15.56■□□□□ 0.08
HMGB1-202ENST00000339872 PCDHAC2Q9Y5I4 1007 aa15.56■□□□□ 0.08
HMGB1-202ENST00000339872 BRCA1P38398 1863 aaKnown RBP15.56■□□□□ 0.08
HMGB1-202ENST00000339872 TGFB2P61812 414 aa15.55■□□□□ 0.08
HMGB1-202ENST00000339872 CEBPZQ03701 1054 aaKnown RBP15.55■□□□□ 0.08
HMGB1-202ENST00000339872 TRIM29Q14134 588 aa15.55■□□□□ 0.08
HMGB1-202ENST00000339872 KRT40Q6A162 431 aa15.55■□□□□ 0.08
HMGB1-202ENST00000339872 SYAP1Q96A49 352 aaPredicted RBP15.55■□□□□ 0.08
HMGB1-202ENST00000339872 KAT14Q9H8E8 782 aa15.55■□□□□ 0.08
HMGB1-202ENST00000339872 ZNF277Q9NRM2 450 aaPredicted RBP15.55■□□□□ 0.08
HMGB1-202ENST00000339872 RBM28Q9NW13 759 aaKnown RBP15.55■□□□□ 0.08
HMGB1-202ENST00000339872 PIM2Q9P1W9 311 aa15.55■□□□□ 0.08
HMGB1-202ENST00000339872 PPP1R1BQ9UD71 204 aaPredicted RBP15.55■□□□□ 0.08
HMGB1-202ENST00000339872 GUCY1A2P33402 732 aa15.55■□□□□ 0.08
HMGB1-202ENST00000339872 DGKHQ86XP1 1220 aa15.55■□□□□ 0.08
HMGB1-202ENST00000339872 LARGE2Q8N3Y3 721 aa15.55■□□□□ 0.08
HMGB1-202ENST00000339872 RGS22Q8NE09 1264 aa15.55■□□□□ 0.08
HMGB1-202ENST00000339872 ZNF396Q96N95 335 aaPredicted RBP15.55■□□□□ 0.08
HMGB1-202ENST00000339872 COL4A5P29400 1685 aa15.55■□□□□ 0.08
HMGB1-202ENST00000339872 FSD2A1L4K1 749 aa15.54■□□□□ 0.08
HMGB1-202ENST00000339872 KIF28PB7ZC32 967 aa15.54■□□□□ 0.08
HMGB1-202ENST00000339872 PLEKHA8P1O95397 391 aa15.54■□□□□ 0.08
HMGB1-202ENST00000339872 DEXIO95424 95 aa15.54■□□□□ 0.08
HMGB1-202ENST00000339872 HDLBPQ00341 1268 aaKnown RBP15.54■□□□□ 0.08
HMGB1-202ENST00000339872 KIF23Q02241 960 aaPredicted RBP15.54■□□□□ 0.08
HMGB1-202ENST00000339872 CCDC178Q5BJE1 867 aa15.54■□□□□ 0.08
HMGB1-202ENST00000339872 CTCFLQ8NI51 663 aaPredicted RBP15.54■□□□□ 0.08
HMGB1-202ENST00000339872 MRIQ9BWK5 157 aa15.54■□□□□ 0.08
HMGB1-202ENST00000339872 FTOQ9C0B1 505 aaKnown RBP eCLIP15.54■□□□□ 0.08
HMGB1-202ENST00000339872 OSBPL5Q9H0X9 879 aaPredicted RBP15.54■□□□□ 0.08
HMGB1-202ENST00000339872 SOGA3Q5TF21 947 aa15.54■□□□□ 0.08
HMGB1-202ENST00000339872 BRAPQ7Z569 592 aa15.54■□□□□ 0.08
HMGB1-202ENST00000339872 USP28Q96RU2 1077 aa15.54■□□□□ 0.08
HMGB1-202ENST00000339872 TCP11L1Q9NUJ3 509 aa15.54■□□□□ 0.08
HMGB1-202ENST00000339872 SERPINA10Q9UK55 444 aa15.54■□□□□ 0.08
HMGB1-202ENST00000339872 ZNF445P59923 1031 aa15.53■□□□□ 0.08
HMGB1-202ENST00000339872 AKAP17AQ02040 695 aaKnown RBP15.53■□□□□ 0.08
HMGB1-202ENST00000339872 NFIAQ12857 509 aa15.53■□□□□ 0.08
HMGB1-202ENST00000339872 KLHL34Q8N239 644 aa15.53■□□□□ 0.08
HMGB1-202ENST00000339872 PNMA1Q8ND90 353 aa15.53■□□□□ 0.08
HMGB1-202ENST00000339872 RNF26Q9BY78 433 aaPredicted RBP15.53■□□□□ 0.08
HMGB1-202ENST00000339872 STX8Q9UNK0 236 aa15.53■□□□□ 0.08
HMGB1-202ENST00000339872 GOLGA6L4A6NEF3 574 aa15.52■□□□□ 0.08
HMGB1-202ENST00000339872 CACNB3P54284 484 aa15.52■□□□□ 0.08
HMGB1-202ENST00000339872 GNL2Q13823 731 aaKnown RBP15.52■□□□□ 0.08
HMGB1-202ENST00000339872 ATL3Q6DD88 541 aa15.52■□□□□ 0.08
HMGB1-202ENST00000339872 TMTC3Q6ZXV5 915 aa15.52■□□□□ 0.08
HMGB1-202ENST00000339872 GAS2L3Q86XJ1 694 aa15.52■□□□□ 0.08
HMGB1-202ENST00000339872 SYCE3A1L190 88 aa15.52■□□□□ 0.07
HMGB1-202ENST00000339872 RAD17O75943 681 aa15.52■□□□□ 0.07
HMGB1-202ENST00000339872 FUT2Q10981 343 aa15.52■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms