RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ZBTB43O43298 467 aa17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 MYO1BO43795 1136 aa17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 TFAP4Q01664 338 aa17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 RCSD1Q6JBY9 416 aa17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 FOXP4Q8IVH2 680 aaPredicted RBP17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 ZFPM1Q8IX07 1006 aa17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 ZNF444Q8N0Y2 327 aaPredicted RBP17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 NSUN7Q8NE18 718 aaKnown RBP17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 SENP2Q9HC62 589 aa17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 SLC12A7Q9Y666 1083 aa17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 CNTNAP1P78357 1384 aa17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 SBF1O95248 1867 aa17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 SIPA1L1O43166 1804 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 IGKV6D-41A0A0C4DH26 115 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 DDAH1O94760 285 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 CTDNEP1O95476 244 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 PDCP20941 246 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 SHMT1P34896 483 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 CACNB3P54284 484 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 STK3Q13188 491 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 CLEC17AQ6ZS10 378 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 MICALL2Q8IY33 904 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 STK11IPQ8N1F8 1099 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 CCDC17Q96LX7 622 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 MAP3K14Q99558 947 aa17.47■□□□□ 0.39
CCDC88C-202ENST00000334448 DDTLA6NHG4 134 aaPredicted RBP17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 SOCS7O14512 581 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 BRD1O95696 1058 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 TSPY3P0CV98 308 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 TSPY8P0CW00 308 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 CALM1P0DP23 149 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 CALM2P0DP24 149 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 CALM3P0DP25 149 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 GJB2P29033 226 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 METAP2P50579 478 aaKnown RBP eCLIP17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 TROAPQ12815 778 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 FAM47AQ5JRC9 791 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 IFIT1BQ5T764 474 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 TATDN1Q6P1N9 297 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 SYNE3Q6ZMZ3 975 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 NFXL1Q6ZNB6 911 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 ZNF654Q8IZM8 581 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 ZKSCAN3Q9BRR0 538 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 DNAJC18Q9H819 358 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 IL17RBQ9NRM6 502 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 GPRC5DQ9NZD1 345 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 PGAP2Q9UHJ9 254 aa17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 HERC5Q9UII4 1024 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 CNOT7Q9UIV1 285 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-202ENST00000334448 CCDC196A0A1B0GTZ2 297 aa17.45■□□□□ 0.38
CCDC88C-202ENST00000334448 CDKL5O76039 1030 aa17.45■□□□□ 0.38
CCDC88C-202ENST00000334448 SLC4A8Q2Y0W8 1093 aa17.45■□□□□ 0.38
CCDC88C-202ENST00000334448 PPP4R3BQ5MIZ7 849 aa17.45■□□□□ 0.38
CCDC88C-202ENST00000334448 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.45■□□□□ 0.38
CCDC88C-202ENST00000334448 FAM217BQ9NTX9 383 aaPredicted RBP17.45■□□□□ 0.38
CCDC88C-202ENST00000334448 KIF3AQ9Y496 699 aa17.45■□□□□ 0.38
CCDC88C-202ENST00000334448 GJA3Q9Y6H8 435 aa17.45■□□□□ 0.38
CCDC88C-202ENST00000334448 GREB1LQ9C091 1923 aaPredicted RBP17.45■□□□□ 0.38
CCDC88C-202ENST00000334448 WDR33Q9C0J8 1336 aaKnown RBP17.45■□□□□ 0.38
CCDC88C-202ENST00000334448 SHTN1A0MZ66 631 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 PTPDC1A2A3K4 754 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 GOLGA8AA7E2F4 631 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 TBC1D12O60347 775 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 GRIN3BO60391 1043 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 MAP3K10Q02779 954 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 TCP10Q12799 353 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 TNFAIP1Q13829 316 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 NTRK3Q16288 839 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 NBPF9Q3BBW0 867 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 CPLX2Q6PUV4 134 aaKnown RBP17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 CATIPQ7Z7H3 387 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 MICU3Q86XE3 530 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 NCOA5Q9HCD5 579 aaKnown RBP17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 RNF181Q9P0P0 153 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 ZDHHC9Q9Y397 364 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 STK36Q9NRP7 1315 aa17.44■□□□□ 0.38
CCDC88C-202ENST00000334448 CLRN2A0PK11 232 aa17.43■□□□□ 0.38
CCDC88C-202ENST00000334448 H7C1D1 291 aa17.43■□□□□ 0.38
CCDC88C-202ENST00000334448 JAK2O60674 1132 aa17.43■□□□□ 0.38
CCDC88C-202ENST00000334448 IFNAR1P17181 557 aa17.43■□□□□ 0.38
CCDC88C-202ENST00000334448 SYT1P21579 422 aa17.43■□□□□ 0.38
CCDC88C-202ENST00000334448 TNNI2P48788 182 aa17.43■□□□□ 0.38
CCDC88C-202ENST00000334448 CCT2P78371 535 aaKnown RBP17.43■□□□□ 0.38
CCDC88C-202ENST00000334448 RTN1Q16799 776 aa17.43■□□□□ 0.38
CCDC88C-202ENST00000334448 KIF4BQ2VIQ3 1234 aa17.43■□□□□ 0.38
CCDC88C-202ENST00000334448 C9orf131Q5VYM1 1079 aa17.43■□□□□ 0.38
CCDC88C-202ENST00000334448 CPLX1O14810 134 aa17.42■□□□□ 0.38
CCDC88C-202ENST00000334448 STX6O43752 255 aa17.42■□□□□ 0.38
CCDC88C-202ENST00000334448 NMT2O60551 498 aa17.42■□□□□ 0.38
CCDC88C-202ENST00000334448 EGFRP00533 1210 aa17.42■□□□□ 0.38
CCDC88C-202ENST00000334448 CDC27P30260 824 aa17.42■□□□□ 0.38
CCDC88C-202ENST00000334448 PKP1Q13835 747 aa17.42■□□□□ 0.38
CCDC88C-202ENST00000334448 FANCBQ8NB91 859 aa17.42■□□□□ 0.38
CCDC88C-202ENST00000334448 L3MBTL3Q96JM7 780 aaPredicted RBP17.42■□□□□ 0.38
CCDC88C-202ENST00000334448 CSRNP1Q96S65 589 aa17.42■□□□□ 0.38
CCDC88C-202ENST00000334448 RBM28Q9NW13 759 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-202ENST00000334448 TCP10L2B9ZVM9 353 aa17.41■□□□□ 0.38
CCDC88C-202ENST00000334448 FDPSP14324 419 aaKnown RBP17.41■□□□□ 0.38
CCDC88C-202ENST00000334448 AKR1B1P15121 316 aa17.41■□□□□ 0.38
CCDC88C-202ENST00000334448 ZSCAN29Q8IWY8 852 aaPredicted RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms