RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 GPBP1L1Q9HC44 474 aaPredicted RBP18.18■□□□□ 0.5
PDLIM5-202ENST00000318007 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.18■□□□□ 0.5
PDLIM5-202ENST00000318007 DTNBO60941 627 aa18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 NPM3O75607 178 aaKnown RBP18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 AKR1B1P15121 316 aa18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 AK2P54819 239 aa18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 CNNM2Q9H8M5 875 aa18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 SENP2Q9HC62 589 aa18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 MCM5P33992 734 aa18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 ANP32AP39687 249 aaKnown RBP18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 SLC4A3P48751 1232 aa18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 RRP1BQ14684 758 aaKnown RBP18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 DHX32Q7L7V1 743 aaKnown RBP18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 PGAP2Q9UHJ9 254 aa18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 MTMR7Q9Y216 660 aa18.17■□□□□ 0.5
PDLIM5-202ENST00000318007 MYH8P13535 1937 aa18.16■□□□□ 0.5
PDLIM5-202ENST00000318007 CERKLQ49MI3 558 aaPredicted RBP18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 CCDC84Q86UT8 332 aaPredicted RBP18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 BRF1Q92994 677 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 UBAC1Q9BSL1 405 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 EHD4Q9H223 541 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 IFIT3O14879 490 aaKnown RBP18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 ST18O60284 1047 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 JAG1P78504 1218 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 ATP2B2Q01814 1243 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 RAB3GAP1Q15042 981 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 SPRYD3Q8NCJ5 442 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 TM6SF1Q9BZW5 370 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 ZNF287Q9HBT7 754 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 STX8Q9UNK0 236 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 TNKSO95271 1327 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 PITPNM2Q9BZ72 1349 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 PCNTO95613 3336 aa18.15■□□□□ 0.5
PDLIM5-202ENST00000318007 HMGB1P09429 215 aaKnown RBP18.14■□□□□ 0.49
PDLIM5-202ENST00000318007 STK3Q13188 491 aa18.14■□□□□ 0.49
PDLIM5-202ENST00000318007 TMEM67Q5HYA8 995 aa18.14■□□□□ 0.49
PDLIM5-202ENST00000318007 MOB2Q70IA6 237 aa18.14■□□□□ 0.49
PDLIM5-202ENST00000318007 FOXP4Q8IVH2 680 aaPredicted RBP18.14■□□□□ 0.49
PDLIM5-202ENST00000318007 SWAP70Q9UH65 585 aa18.14■□□□□ 0.49
PDLIM5-202ENST00000318007 SSC5DA1L4H1 1573 aa18.14■□□□□ 0.49
PDLIM5-202ENST00000318007 ORC4O43929 436 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 FGRP09769 529 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 RXRAP19793 462 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 EXOSC10Q01780 885 aaKnown RBP18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 APOBRQ0VD83 1088 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 TOB2Q14106 344 aaPredicted RBP18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 TTLL12Q14166 644 aaPredicted RBP18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 ZC3H15Q8WU90 426 aaKnown RBP18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 CDCA5Q96FF9 252 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 TTC14Q96N46 770 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 MYL10Q9BUA6 226 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 IL17RBQ9NRM6 502 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 COL2A1P02458 1487 aaPredicted RBP18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 RAD21O60216 631 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 GH2P01242 217 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 NFXL1Q6ZNB6 911 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 CDC37L1Q7L3B6 337 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 IQCA1Q86XH1 822 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 ZKSCAN4Q969J2 545 aaPredicted RBP18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 WRNIP1Q96S55 665 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 FOXD4L1Q9NU39 408 aa18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 HERC5Q9UII4 1024 aaKnown RBP18.13■□□□□ 0.49
PDLIM5-202ENST00000318007 YY1P25490 414 aa18.12■□□□□ 0.49
PDLIM5-202ENST00000318007 INPP5BP32019 993 aa18.12■□□□□ 0.49
PDLIM5-202ENST00000318007 CCDC144CPQ8IYA2 1237 aa18.12■□□□□ 0.49
PDLIM5-202ENST00000318007 CEP95Q96GE4 821 aa18.12■□□□□ 0.49
PDLIM5-202ENST00000318007 ZSCAN10Q96SZ4 725 aaPredicted RBP18.12■□□□□ 0.49
PDLIM5-202ENST00000318007 ERICH2A1L162 156 aa18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 PPFIA3O75145 1194 aa18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 LARGE1O95461 756 aa18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 ABCB5Q2M3G0 1257 aa18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 LDHDQ86WU2 507 aa18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 ENAHQ8N8S7 591 aaPredicted RBP18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 IL17RAQ96F46 866 aa18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 PCP11498 1178 aaKnown RBP18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 SEPT2Q15019 361 aa18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 TATDN1Q6P1N9 297 aa18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 RASGRP2Q7LDG7 609 aa18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 TBC1D2Q9BYX2 928 aa18.11■□□□□ 0.49
PDLIM5-202ENST00000318007 SH2B2O14492 632 aaPredicted RBP18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 WTAPQ15007 396 aa18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 SART3Q15020 963 aaKnown RBP18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 HSCBQ8IWL3 235 aa18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 IGDCC4Q8TDY8 1250 aa18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 LY9Q9HBG7 655 aa18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 TPCN1Q9ULQ1 816 aa18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 ANGEL1Q9UNK9 670 aaKnown RBP18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 PPP2R3BQ9Y5P8 575 aa18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 SUPT20HL1Q3ZLR7 823 aa18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 IFIT1BQ5T764 474 aaKnown RBP18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 LRRC47Q8N1G4 583 aaKnown RBP18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 TAOK2Q9UL54 1235 aa18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 BRPF3Q9ULD4 1205 aa18.1■□□□□ 0.49
PDLIM5-202ENST00000318007 KLF18A0A0U1RQI7 1052 aa18.09■□□□□ 0.49
PDLIM5-202ENST00000318007 DCAF15Q66K64 600 aa18.09■□□□□ 0.49
PDLIM5-202ENST00000318007 METTL16Q86W50 562 aaKnown RBP18.09■□□□□ 0.49
PDLIM5-202ENST00000318007 MICU3Q86XE3 530 aa18.09■□□□□ 0.49
PDLIM5-202ENST00000318007 NECAB1Q8N987 351 aa18.09■□□□□ 0.49
PDLIM5-202ENST00000318007 CCDC69A6NI79 296 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms