RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 METTL16Q86W50 562 aaKnown RBP21.5■■□□□ 1.03
HMGA1-201ENST00000311487 KLRG1Q96E93 195 aa21.5■■□□□ 1.03
HMGA1-201ENST00000311487 JAKMIP1Q96N16 626 aaKnown RBP21.5■■□□□ 1.03
HMGA1-201ENST00000311487 LRRC2Q9BYS8 371 aa21.5■■□□□ 1.03
HMGA1-201ENST00000311487 UPF2Q9HAU5 1272 aaKnown RBP21.5■■□□□ 1.03
HMGA1-201ENST00000311487 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.5■■□□□ 1.03
HMGA1-201ENST00000311487 PASKQ96RG2 1323 aa21.5■■□□□ 1.03
HMGA1-201ENST00000311487 ROBO3Q96MS0 1386 aa21.5■■□□□ 1.03
HMGA1-201ENST00000311487 TBC1D12O60347 775 aa21.49■■□□□ 1.03
HMGA1-201ENST00000311487 GH2P01242 217 aa21.49■■□□□ 1.03
HMGA1-201ENST00000311487 RAB3GAP1Q15042 981 aa21.49■■□□□ 1.03
HMGA1-201ENST00000311487 GBA2Q9HCG7 927 aaPredicted RBP21.49■■□□□ 1.03
HMGA1-201ENST00000311487 MAP3K10Q02779 954 aa21.49■■□□□ 1.03
HMGA1-201ENST00000311487 CYB5R4Q7L1T6 521 aa21.49■■□□□ 1.03
HMGA1-201ENST00000311487 CNKSR2Q8WXI2 1034 aa21.49■■□□□ 1.03
HMGA1-201ENST00000311487 UPF3BQ9BZI7 483 aaKnown RBP21.49■■□□□ 1.03
HMGA1-201ENST00000311487 ZSWIM5Q9P217 1185 aa21.49■■□□□ 1.03
HMGA1-201ENST00000311487 SWAP70Q9UH65 585 aa21.49■■□□□ 1.03
HMGA1-201ENST00000311487 TSPY2A6NKD2 308 aa21.48■■□□□ 1.03
HMGA1-201ENST00000311487 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.48■■□□□ 1.03
HMGA1-201ENST00000311487 LAMA4Q16363 1823 aa21.48■■□□□ 1.03
HMGA1-201ENST00000311487 TSPY3P0CV98 308 aa21.47■■□□□ 1.03
HMGA1-201ENST00000311487 TSPY8P0CW00 308 aa21.47■■□□□ 1.03
HMGA1-201ENST00000311487 CASTP20810 708 aaKnown RBP21.47■■□□□ 1.03
HMGA1-201ENST00000311487 CAP2P40123 477 aa21.47■■□□□ 1.03
HMGA1-201ENST00000311487 HTRA3P83110 453 aa21.47■■□□□ 1.03
HMGA1-201ENST00000311487 VGLL4Q14135 290 aa21.47■■□□□ 1.03
HMGA1-201ENST00000311487 ABCB5Q2M3G0 1257 aa21.47■■□□□ 1.03
HMGA1-201ENST00000311487 HOOK2Q96ED9 719 aa21.47■■□□□ 1.03
HMGA1-201ENST00000311487 RNF41Q9H4P4 317 aaPredicted RBP21.47■■□□□ 1.03
HMGA1-201ENST00000311487 TRDNQ13061 729 aa21.47■■□□□ 1.03
HMGA1-201ENST00000311487 SEPT2Q15019 361 aa21.47■■□□□ 1.03
HMGA1-201ENST00000311487 RALYLQ86SE5 291 aaKnown RBP21.47■■□□□ 1.03
HMGA1-201ENST00000311487 C2orf69Q8N8R5 385 aa21.47■■□□□ 1.03
HMGA1-201ENST00000311487 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.47■■□□□ 1.03
HMGA1-201ENST00000311487 ELP3Q9H9T3 547 aa21.47■■□□□ 1.03
HMGA1-201ENST00000311487 GPHNQ9NQX3 736 aaPredicted RBP21.47■■□□□ 1.03
HMGA1-201ENST00000311487 FGRP09769 529 aa21.46■■□□□ 1.03
HMGA1-201ENST00000311487 IREB2P48200 963 aaKnown RBP21.46■■□□□ 1.03
HMGA1-201ENST00000311487 ATP2B2Q01814 1243 aa21.46■■□□□ 1.03
HMGA1-201ENST00000311487 MKRN3Q13064 507 aaKnown RBP21.46■■□□□ 1.03
HMGA1-201ENST00000311487 ARMC9Q7Z3E5 817 aa21.46■■□□□ 1.03
HMGA1-201ENST00000311487 NCOA7Q8NI08 942 aa21.46■■□□□ 1.03
HMGA1-201ENST00000311487 KCNB2Q92953 911 aa21.46■■□□□ 1.03
HMGA1-201ENST00000311487 NEK1Q96PY6 1258 aa21.46■■□□□ 1.03
HMGA1-201ENST00000311487 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.46■■□□□ 1.03
HMGA1-201ENST00000311487 MAP3K9P80192 1104 aa21.45■■□□□ 1.02
HMGA1-201ENST00000311487 LARP6Q9BRS8 491 aaKnown RBP21.45■■□□□ 1.02
HMGA1-201ENST00000311487 IL17RBQ9NRM6 502 aa21.45■■□□□ 1.02
HMGA1-201ENST00000311487 ORC4O43929 436 aa21.45■■□□□ 1.02
HMGA1-201ENST00000311487 GUCY1A2P33402 732 aa21.45■■□□□ 1.02
HMGA1-201ENST00000311487 ESR2Q92731 530 aa21.45■■□□□ 1.02
HMGA1-201ENST00000311487 KIF2CQ99661 725 aa21.45■■□□□ 1.02
HMGA1-201ENST00000311487 ZNF287Q9HBT7 754 aa21.45■■□□□ 1.02
HMGA1-201ENST00000311487 ZNF112Q9UJU3 913 aa21.45■■□□□ 1.02
HMGA1-201ENST00000311487 ABT1Q9ULW3 272 aaKnown RBP21.45■■□□□ 1.02
HMGA1-201ENST00000311487 MYH8P13535 1937 aa21.44■■□□□ 1.02
HMGA1-201ENST00000311487 HUNKP57058 714 aa21.44■■□□□ 1.02
HMGA1-201ENST00000311487 ANTXR2P58335 489 aa21.44■■□□□ 1.02
HMGA1-201ENST00000311487 FSTL1Q12841 308 aa21.44■■□□□ 1.02
HMGA1-201ENST00000311487 GRM1Q13255 1194 aa21.44■■□□□ 1.02
HMGA1-201ENST00000311487 TBC1D32Q96NH3 1257 aa21.44■■□□□ 1.02
HMGA1-201ENST00000311487 KRT23Q9C075 422 aa21.44■■□□□ 1.02
HMGA1-201ENST00000311487 ZBTB21Q9ULJ3 1066 aa21.44■■□□□ 1.02
HMGA1-201ENST00000311487 CTNND1O60716 968 aaKnown RBP21.43■■□□□ 1.02
HMGA1-201ENST00000311487 DGKZQ13574 1117 aa21.43■■□□□ 1.02
HMGA1-201ENST00000311487 TSGA10IPQ3SY00 556 aa21.43■■□□□ 1.02
HMGA1-201ENST00000311487 MB21D2Q8IYB1 491 aaPredicted RBP21.43■■□□□ 1.02
HMGA1-201ENST00000311487 CEP95Q96GE4 821 aa21.43■■□□□ 1.02
HMGA1-201ENST00000311487 SENP2Q9HC62 589 aa21.43■■□□□ 1.02
HMGA1-201ENST00000311487 MTMR7Q9Y216 660 aa21.43■■□□□ 1.02
HMGA1-201ENST00000311487 EPB41L2O43491 1005 aaKnown RBP21.43■■□□□ 1.02
HMGA1-201ENST00000311487 CNNM2Q9H8M5 875 aa21.43■■□□□ 1.02
HMGA1-201ENST00000311487 CABP5Q9NP86 173 aa21.43■■□□□ 1.02
HMGA1-201ENST00000311487 CSADQ9Y600 493 aa21.43■■□□□ 1.02
HMGA1-201ENST00000311487 SNCAIPQ9Y6H5 919 aa21.43■■□□□ 1.02
HMGA1-201ENST00000311487 PRC1O43663 620 aa21.42■■□□□ 1.02
HMGA1-201ENST00000311487 RAD21O60216 631 aa21.42■■□□□ 1.02
HMGA1-201ENST00000311487 EIF5BO60841 1220 aaKnown RBP21.42■■□□□ 1.02
HMGA1-201ENST00000311487 RBM25P49756 843 aaKnown RBP21.42■■□□□ 1.02
HMGA1-201ENST00000311487 ZYXQ15942 572 aaKnown RBP21.42■■□□□ 1.02
HMGA1-201ENST00000311487 SCYL3Q8IZE3 742 aa21.42■■□□□ 1.02
HMGA1-201ENST00000311487 PICK1Q9NRD5 415 aa21.42■■□□□ 1.02
HMGA1-201ENST00000311487 STX8Q9UNK0 236 aa21.42■■□□□ 1.02
HMGA1-201ENST00000311487 ZHX2Q9Y6X8 837 aa21.42■■□□□ 1.02
HMGA1-201ENST00000311487 CEP350Q5VT06 3117 aa21.42■■□□□ 1.02
HMGA1-201ENST00000311487 OTOFQ9HC10 1997 aa21.41■■□□□ 1.02
HMGA1-201ENST00000311487 ECE1P42892 770 aa21.41■■□□□ 1.02
HMGA1-201ENST00000311487 NOL8Q76FK4 1167 aaKnown RBP21.41■■□□□ 1.02
HMGA1-201ENST00000311487 SAPCD2Q86UD0 394 aa21.41■■□□□ 1.02
HMGA1-201ENST00000311487 ANKRD13AQ8IZ07 590 aa21.41■■□□□ 1.02
HMGA1-201ENST00000311487 OTUD5Q96G74 571 aa21.41■■□□□ 1.02
HMGA1-201ENST00000311487 TRPM7Q96QT4 1865 aa21.41■■□□□ 1.02
HMGA1-201ENST00000311487 TMEM88BA6NKF7 163 aa21.41■■□□□ 1.02
HMGA1-201ENST00000311487 PTPRAP18433 802 aa21.41■■□□□ 1.02
HMGA1-201ENST00000311487 KRT32Q14532 448 aa21.41■■□□□ 1.02
HMGA1-201ENST00000311487 BLOC1S2Q6QNY1 142 aa21.41■■□□□ 1.02
HMGA1-201ENST00000311487 ACER1Q8TDN7 264 aa21.41■■□□□ 1.02
HMGA1-201ENST00000311487 TRIM75PA6NK02 468 aa21.4■■□□□ 1.02
HMGA1-201ENST00000311487 MAP3K11Q16584 847 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms