RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 PTPDC1A2A3K4 754 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 DNM2P50570 870 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 KSR2Q6VAB6 950 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 JDP2Q8WYK2 163 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 RTEL1Q9NZ71 1219 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 STX2P32856 288 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 FAM71BQ8TC56 605 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 WDR70Q9NW82 654 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 GOLGA8KD6RF30 607 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 NUP160Q12769 1436 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 N4BP1O75113 896 aaKnown RBP17.1■□□□□ 0.33
HCFC1-201ENST00000310441 DEUP1Q05D60 604 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 SFMBT2Q5VUG0 894 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 SND1Q7KZF4 910 aaKnown RBP eCLIP17.1■□□□□ 0.33
HCFC1-201ENST00000310441 DACT3Q96B18 629 aaPredicted RBP17.1■□□□□ 0.33
HCFC1-201ENST00000310441 IFIH1Q9BYX4 1025 aaKnown RBP17.1■□□□□ 0.33
HCFC1-201ENST00000310441 BBOF1Q8ND07 529 aa17.1■□□□□ 0.33
HCFC1-201ENST00000310441 PICALMQ13492 652 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 KCNH3Q9ULD8 1083 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 LAMC3Q9Y6N6 1575 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 ARHGEF35A5YM69 484 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 THAP12O43422 761 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 RASEFQ8IZ41 740 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 PLCD3Q8N3E9 789 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.09■□□□□ 0.332e-8■□□□□ 11.2
HCFC1-201ENST00000310441 RAPGEF6Q8TEU7 1601 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 M0QZ92 97 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 SMIM24O75264 130 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 LMNB1P20700 586 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 PHEXP78562 749 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 NT5C3AQ9H0P0 336 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 GPHNQ9NQX3 736 aaPredicted RBP17.09■□□□□ 0.33
HCFC1-201ENST00000310441 CHPF2Q9P2E5 772 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 CFAP43Q8NDM7 1665 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 MSH6P52701 1360 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 C20orf194Q5TEA3 1177 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 CADPS2Q86UW7 1296 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 TRIM4Q9C037 500 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 WDR7Q9Y4E6 1490 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 H0YCG3 227 aa17.09■□□□□ 0.33
HCFC1-201ENST00000310441 ZC3H12CQ9C0D7 883 aaKnown RBP17.09■□□□□ 0.33
HCFC1-201ENST00000310441 TRPC6Q9Y210 931 aa17.08■□□□□ 0.33
HCFC1-201ENST00000310441 MYRIPQ8NFW9 859 aa17.08■□□□□ 0.33
HCFC1-201ENST00000310441 TRIM56Q9BRZ2 755 aaKnown RBP17.08■□□□□ 0.33
HCFC1-201ENST00000310441 PLXNC1O60486 1568 aa17.08■□□□□ 0.33
HCFC1-201ENST00000310441 TTC4O95801 387 aa17.08■□□□□ 0.33
HCFC1-201ENST00000310441 PDE4DQ08499 809 aa17.08■□□□□ 0.33
HCFC1-201ENST00000310441 KRT71Q3SY84 523 aa17.08■□□□□ 0.33
HCFC1-201ENST00000310441 AMFRQ9UKV5 643 aa17.08■□□□□ 0.33
HCFC1-201ENST00000310441 DENND2AQ9ULE3 1009 aa17.08■□□□□ 0.33
HCFC1-201ENST00000310441 ATP5J2-PTCD1G3V325 749 aa17.08■□□□□ 0.32
HCFC1-201ENST00000310441 ATP8B2P98198 1209 aa17.08■□□□□ 0.32
HCFC1-201ENST00000310441 ANKRD20A4Q4UJ75 823 aa17.08■□□□□ 0.32
HCFC1-201ENST00000310441 ANKRD20A8PQ5CZ79 823 aa17.08■□□□□ 0.32
HCFC1-201ENST00000310441 ANKRD20A2Q5SQ80 823 aa17.08■□□□□ 0.32
HCFC1-201ENST00000310441 ANKRD20A1Q5TYW2 823 aa17.08■□□□□ 0.32
HCFC1-201ENST00000310441 TPTE2Q6XPS3 522 aa17.08■□□□□ 0.32
HCFC1-201ENST00000310441 NOD1Q9Y239 953 aa17.08■□□□□ 0.32
HCFC1-201ENST00000310441 ESRRGP62508 458 aa17.08■□□□□ 0.32
HCFC1-201ENST00000310441 APBA1Q02410 837 aa17.08■□□□□ 0.32
HCFC1-201ENST00000310441 LMNB2Q03252 620 aa17.07■□□□□ 0.32
HCFC1-201ENST00000310441 CTTNBP2NLQ9P2B4 639 aa17.07■□□□□ 0.32
HCFC1-201ENST00000310441 PPP1R9AQ9ULJ8 1098 aa17.07■□□□□ 0.32
HCFC1-201ENST00000310441 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.07■□□□□ 0.32
HCFC1-201ENST00000310441 SPZ1Q9BXG8 430 aa17.07■□□□□ 0.32
HCFC1-201ENST00000310441 DDX41Q9UJV9 622 aaKnown RBP17.07■□□□□ 0.32
HCFC1-201ENST00000310441 STX17P56962 302 aa17.07■□□□□ 0.32
HCFC1-201ENST00000310441 PROCA1Q8NCQ7 364 aaPredicted RBP17.07■□□□□ 0.32
HCFC1-201ENST00000310441 XAB2Q9HCS7 855 aaKnown RBP17.07■□□□□ 0.32
HCFC1-201ENST00000310441 AK2P54819 239 aa17.07■□□□□ 0.32
HCFC1-201ENST00000310441 SLC17A8Q8NDX2 589 aa17.07■□□□□ 0.32
HCFC1-201ENST00000310441 DDX21Q9NR30 783 aaKnown RBP eCLIP17.07■□□□□ 0.32
HCFC1-201ENST00000310441 DNM3Q9UQ16 869 aa17.07■□□□□ 0.32
HCFC1-201ENST00000310441 CCDC169A6NNP5 214 aa17.07■□□□□ 0.32
HCFC1-201ENST00000310441 NMIQ13287 307 aaPredicted RBP17.07■□□□□ 0.32
HCFC1-201ENST00000310441 PDZD8Q8NEN9 1154 aa17.07■□□□□ 0.32
HCFC1-201ENST00000310441 ANGEL1Q9UNK9 670 aaKnown RBP17.07■□□□□ 0.32
HCFC1-201ENST00000310441 TRIM42Q8IWZ5 723 aa17.07■□□□□ 0.32
HCFC1-201ENST00000310441 NLRP7Q8WX94 980 aa17.07■□□□□ 0.32
HCFC1-201ENST00000310441 PALM3A6NDB9 673 aaPredicted RBP17.06■□□□□ 0.32
HCFC1-201ENST00000310441 ATP6V1AP38606 617 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 MRPL44Q9H9J2 332 aaKnown RBP17.06■□□□□ 0.32
HCFC1-201ENST00000310441 SAR1BQ9Y6B6 198 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 ARHGAP42A6NI28 874 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 CALCRLQ16602 461 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 A0A1B0GVL5 298 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 FAF1Q9UNN5 650 aaPredicted RBP17.06■□□□□ 0.32
HCFC1-201ENST00000310441 C11orf95C9JLR9 678 aaPredicted RBP17.06■□□□□ 0.32
HCFC1-201ENST00000310441 PALM2Q8IXS6 379 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 GSTA1P08263 222 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 GSTA2P09210 222 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 GARSP41250 739 aaKnown RBP17.06■□□□□ 0.32
HCFC1-201ENST00000310441 ZMAT2Q96NC0 199 aaKnown RBP17.06■□□□□ 0.32
HCFC1-201ENST00000310441 ABCC1P33527 1531 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 KIAA0586Q9BVV6 1533 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 LPXNO60711 386 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 LRGUKQ96M69 825 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 EFHD1Q9BUP0 239 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 LRRC2Q9BYS8 371 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 CCDC68Q9H2F9 335 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms