RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PPANQ9NQ55 473 aaKnown RBP11□□□□□ -0.65
COL6A3-201ENST00000295550 EIF4A1P60842 406 aaKnown RBP11□□□□□ -0.65
COL6A3-201ENST00000295550 ME3Q16798 604 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 PPFIA2O75334 1257 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 IFT20Q8IY31 132 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 AFAP1L2Q8N4X5 818 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 BAG1Q99933 345 aaPredicted RBP11□□□□□ -0.65
COL6A3-201ENST00000295550 DEPDC5O75140 1603 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 EYA2O00167 538 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 RILPL1Q5EBL4 403 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 C8orf74Q6P047 294 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 TAOK1Q7L7X3 1001 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 KBTBD3Q8NAB2 608 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 MSANTD4Q8NCY6 345 aa11□□□□□ -0.65
COL6A3-201ENST00000295550 IL2RBP14784 551 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 GCKRQ14397 625 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 NUMA1Q14980 2115 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 CLTCQ00610 1675 aaKnown RBP10.99□□□□□ -0.65
COL6A3-201ENST00000295550 GCP02774 474 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 ATP5JP18859 108 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 COG7P83436 770 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 PSMD6Q15008 389 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 SUCLG2Q96I99 432 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 TACC3Q9Y6A5 838 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 HGSO14964 777 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-201ENST00000295550 MYCNP04198 464 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-201ENST00000295550 TUBB2AQ13885 445 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 TUBB2BQ9BVA1 445 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 VAT1LQ9HCJ6 419 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 ANGEL1Q9UNK9 670 aaKnown RBP10.99□□□□□ -0.65
COL6A3-201ENST00000295550 A0A1B0GVL5 298 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 AKR1B15C9JRZ8 316 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-201ENST00000295550 CD2BP2O95400 341 aaKnown RBP10.99□□□□□ -0.65
COL6A3-201ENST00000295550 GNAQP50148 359 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 SH3BGRP55822 239 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-201ENST00000295550 TRIM14Q14142 442 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 CHST3Q7LGC8 479 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 DSCC1Q9BVC3 393 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 CTNND2Q9UQB3 1225 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 SYNRGQ9UMZ2 1314 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 CYP7A1P22680 504 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 ERCC5P28715 1186 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-201ENST00000295550 MYO3AQ8NEV4 1616 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 ZBTB17Q13105 803 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 HEATR3Q7Z4Q2 680 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 TMEM87BQ96K49 555 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 RAB3IPQ96QF0 476 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-201ENST00000295550 CHRNA2Q15822 529 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 XAB2Q9HCS7 855 aaKnown RBP10.99□□□□□ -0.65
COL6A3-201ENST00000295550 FAM169AQ9Y6X4 670 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 WDR78Q5VTH9 848 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 C17orf53Q8N3J3 647 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-201ENST00000295550 LSG1Q9H089 658 aaKnown RBP10.99□□□□□ -0.65
COL6A3-201ENST00000295550 ZSWIM6Q9HCJ5 1215 aa10.99□□□□□ -0.65
COL6A3-201ENST00000295550 DCAF8L1A6NGE4 600 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 FAM13AO94988 1023 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 MIER3Q7Z3K6 550 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 MAGEB6Q8N7X4 407 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 BANK1Q8NDB2 785 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.98□□□□□ -0.65
COL6A3-201ENST00000295550 ACTN4O43707 911 aaKnown RBP10.98□□□□□ -0.65
COL6A3-201ENST00000295550 UBL4BQ8N7F7 174 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 MICAL1Q8TDZ2 1067 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 MYOM1P52179 1685 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 LUC7L3O95232 432 aaKnown RBP10.98□□□□□ -0.65
COL6A3-201ENST00000295550 LDHCP07864 332 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 CCT6AP40227 531 aaKnown RBP10.98□□□□□ -0.65
COL6A3-201ENST00000295550 CCDC65Q8IXS2 484 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 RPGRQ92834 1020 aaKnown RBP10.98□□□□□ -0.65
COL6A3-201ENST00000295550 ARHGEF28Q8N1W1 1705 aaKnown RBP10.98□□□□□ -0.65
COL6A3-201ENST00000295550 MAGEB6P1A0A0J9YX57 407 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 EXOC5O00471 708 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 WDHD1O75717 1129 aaPredicted RBP10.98□□□□□ -0.65
COL6A3-201ENST00000295550 CUTAO60888 179 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 NLRP12P59046 1061 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 CSRNP2Q9H175 543 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 RABEP2Q9H5N1 569 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 PLCB1Q9NQ66 1216 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 DHX58Q96C10 678 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 HDAC9Q9UKV0 1011 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 KCNH3Q9ULD8 1083 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 METP08581 1390 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 ANKRD12Q6UB98 2062 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 KCNA6P17658 529 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 ITIH3Q06033 890 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 AP1ARQ63HQ0 302 aa10.98□□□□□ -0.65
COL6A3-201ENST00000295550 PHF23Q9BUL5 403 aaPredicted RBP10.98□□□□□ -0.65
COL6A3-201ENST00000295550 E7EVH7 732 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 SLC4A8Q2Y0W8 1093 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 OAS2P29728 719 aaKnown RBP10.97□□□□□ -0.65
COL6A3-201ENST00000295550 MCM7P33993 719 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 DENND2CQ68D51 928 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 DPH6Q7L8W6 267 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 GAS2L3Q86XJ1 694 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 IGSF1Q8N6C5 1336 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 DIXDC1Q155Q3 683 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 NEURL1BA8MQ27 555 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 TSPY3P0CV98 308 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 TSPY8P0CW00 308 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 CDC25BP30305 580 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms