RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 MYCP01106 439 aaPredicted RBP12.69□□□□□ -0.38
VPS50-201ENST00000251739 GJB1P08034 283 aa12.69□□□□□ -0.38
VPS50-201ENST00000251739 HOXD10P28358 340 aa12.69□□□□□ -0.38
VPS50-201ENST00000251739 FCGRTP55899 365 aa12.69□□□□□ -0.38
VPS50-201ENST00000251739 G3BP1Q13283 466 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS50-201ENST00000251739 TNNI3KQ59H18 835 aa12.69□□□□□ -0.38
VPS50-201ENST00000251739 GORABQ5T7V8 394 aa12.69□□□□□ -0.38
VPS50-201ENST00000251739 ZKSCAN2Q63HK3 967 aa12.69□□□□□ -0.38
VPS50-201ENST00000251739 GADL1Q6ZQY3 521 aa12.69□□□□□ -0.38
VPS50-201ENST00000251739 PROCA1Q8NCQ7 364 aaPredicted RBP12.69□□□□□ -0.38
VPS50-201ENST00000251739 RAET1EQ8TD07 263 aa12.69□□□□□ -0.38
VPS50-201ENST00000251739 ZNF512BQ96KM6 892 aaPredicted RBP12.69□□□□□ -0.38
VPS50-201ENST00000251739 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.69□□□□□ -0.38
VPS50-201ENST00000251739 GABRQQ9UN88 632 aa12.69□□□□□ -0.38
VPS50-201ENST00000251739 FPGT-TNNI3KV9GXZ4 949 aa12.69□□□□□ -0.38
VPS50-201ENST00000251739 CCL5P13501 91 aa12.68□□□□□ -0.38
VPS50-201ENST00000251739 GJA8P48165 433 aa12.68□□□□□ -0.38
VPS50-201ENST00000251739 PPP4CP60510 307 aa12.68□□□□□ -0.38
VPS50-201ENST00000251739 TREML2Q5T2D2 321 aa12.68□□□□□ -0.38
VPS50-201ENST00000251739 ADGRA1Q86SQ6 560 aa12.68□□□□□ -0.38
VPS50-201ENST00000251739 METTL16Q86W50 562 aaKnown RBP12.68□□□□□ -0.38
VPS50-201ENST00000251739 TEX11Q8IYF3 940 aa12.68□□□□□ -0.38
VPS50-201ENST00000251739 SLAIN1Q8ND83 568 aa12.68□□□□□ -0.38
VPS50-201ENST00000251739 DBNDD2Q9BQY9 259 aa12.68□□□□□ -0.38
VPS50-201ENST00000251739 DNAJC18Q9H819 358 aa12.68□□□□□ -0.38
VPS50-201ENST00000251739 SCUBE2Q9NQ36 999 aa12.68□□□□□ -0.38
VPS50-201ENST00000251739 RAI14Q9P0K7 980 aa12.68□□□□□ -0.38
VPS50-201ENST00000251739 HERC5Q9UII4 1024 aaKnown RBP12.68□□□□□ -0.38
VPS50-201ENST00000251739 NOP58Q9Y2X3 529 aaKnown RBP12.68□□□□□ -0.38
VPS50-201ENST00000251739 IGSF3O75054 1194 aa12.67□□□□□ -0.38
VPS50-201ENST00000251739 CYP2E1P05181 493 aaPredicted RBP12.67□□□□□ -0.38
VPS50-201ENST00000251739 RLBP1P12271 317 aa12.67□□□□□ -0.38
VPS50-201ENST00000251739 CAP2P40123 477 aa12.67□□□□□ -0.38
VPS50-201ENST00000251739 ATP8B2P98198 1209 aa12.67□□□□□ -0.38
VPS50-201ENST00000251739 IRF5Q13568 498 aa12.67□□□□□ -0.38
VPS50-201ENST00000251739 FAM110CQ1W6H9 321 aa12.67□□□□□ -0.38
VPS50-201ENST00000251739 SH3D19Q5HYK7 790 aa12.67□□□□□ -0.38
VPS50-201ENST00000251739 TMEM92Q6UXU6 159 aa12.67□□□□□ -0.38
VPS50-201ENST00000251739 ZNF280CQ8ND82 737 aa12.67□□□□□ -0.38
VPS50-201ENST00000251739 PXYLP1Q8TE99 480 aa12.67□□□□□ -0.38
VPS50-201ENST00000251739 SH3RF3Q8TEJ3 882 aaPredicted RBP12.67□□□□□ -0.38
VPS50-201ENST00000251739 TBC1D2Q9BYX2 928 aa12.67□□□□□ -0.38
VPS50-201ENST00000251739 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.67□□□□□ -0.38
VPS50-201ENST00000251739 DBNLQ9UJU6 430 aaKnown RBP12.67□□□□□ -0.38
VPS50-201ENST00000251739 FLT1P17948 1338 aa12.66□□□□□ -0.38
VPS50-201ENST00000251739 FLT3LGP49771 235 aa12.66□□□□□ -0.38
VPS50-201ENST00000251739 FXR1P51114 621 aaKnown RBP eCLIP12.66□□□□□ -0.38
VPS50-201ENST00000251739 SPP2Q13103 211 aa12.66□□□□□ -0.38
VPS50-201ENST00000251739 NKX2-3Q8TAU0 364 aa12.66□□□□□ -0.38
VPS50-201ENST00000251739 SMCR8Q8TEV9 937 aaPredicted RBP12.66□□□□□ -0.38
VPS50-201ENST00000251739 CRISPLD2Q9H0B8 497 aa12.66□□□□□ -0.38
VPS50-201ENST00000251739 SNRKQ9NRH2 765 aa12.66□□□□□ -0.38
VPS50-201ENST00000251739 LRP2BPQ9P2M1 347 aa12.66□□□□□ -0.38
VPS50-201ENST00000251739 LAMA3Q16787 3333 aa12.66□□□□□ -0.38
VPS50-201ENST00000251739 NAV1Q8NEY1 1877 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 H0YGN5 161 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 ZBTB7BO15156 539 aaPredicted RBP12.65□□□□□ -0.38
VPS50-201ENST00000251739 ADCY3O60266 1144 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 ELNP15502 786 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 HMGCS2P54868 508 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 UBXN2AP68543 259 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 JAG1P78504 1218 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 NAA16Q6N069 864 aaPredicted RBP12.65□□□□□ -0.38
VPS50-201ENST00000251739 U2AF1L4Q8WU68 220 aaKnown RBP12.65□□□□□ -0.38
VPS50-201ENST00000251739 WDR18Q9BV38 432 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 RNF208Q9H0X6 261 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 UNC93B1Q9H1C4 597 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 DHX36Q9H2U1 1008 aaKnown RBP12.65□□□□□ -0.38
VPS50-201ENST00000251739 C1orf115Q9H7X2 142 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 PIH1D3Q9NQM4 214 aaKnown RBP12.65□□□□□ -0.38
VPS50-201ENST00000251739 AATFQ9NY61 560 aaKnown RBP eCLIP12.65□□□□□ -0.38
VPS50-201ENST00000251739 TLR7Q9NYK1 1049 aaKnown RBP12.65□□□□□ -0.38
VPS50-201ENST00000251739 PI4KBQ9UBF8 816 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 PNMA3Q9UL41 463 aa12.65□□□□□ -0.38
VPS50-201ENST00000251739 USP17L5A8MUK1 530 aa12.64□□□□□ -0.39
VPS50-201ENST00000251739 TNPO2O14787 897 aaKnown RBP12.64□□□□□ -0.39
VPS50-201ENST00000251739 SURF6O75683 361 aaKnown RBP12.64□□□□□ -0.39
VPS50-201ENST00000251739 INHAP05111 366 aa12.64□□□□□ -0.39
VPS50-201ENST00000251739 ZAP70P43403 619 aa12.64□□□□□ -0.39
VPS50-201ENST00000251739 GCLCP48506 637 aaPredicted RBP12.64□□□□□ -0.39
VPS50-201ENST00000251739 TTC39AQ5SRH9 613 aa12.64□□□□□ -0.39
VPS50-201ENST00000251739 ANKRD13CQ8N6S4 541 aa12.64□□□□□ -0.39
VPS50-201ENST00000251739 PAK6Q9NQU5 681 aaPredicted RBP12.64□□□□□ -0.39
VPS50-201ENST00000251739 FRMPD3Q5JV73 1810 aa12.63□□□□□ -0.39
VPS50-201ENST00000251739 BAG3O95817 575 aa12.63□□□□□ -0.39
VPS50-201ENST00000251739 ASNSP08243 561 aa12.63□□□□□ -0.39
VPS50-201ENST00000251739 PDE4AP27815 886 aa12.63□□□□□ -0.39
VPS50-201ENST00000251739 SHROOM1Q2M3G4 852 aaPredicted RBP12.63□□□□□ -0.39
VPS50-201ENST00000251739 CCDC158Q5M9N0 1113 aa12.63□□□□□ -0.39
VPS50-201ENST00000251739 MAPKAPK5Q8IW41 473 aa12.63□□□□□ -0.39
VPS50-201ENST00000251739 EAF2Q96CJ1 260 aaPredicted RBP12.63□□□□□ -0.39
VPS50-201ENST00000251739 NOL10Q9BSC4 688 aaKnown RBP12.63□□□□□ -0.39
VPS50-201ENST00000251739 ASCC2Q9H1I8 757 aaPredicted RBP12.63□□□□□ -0.39
VPS50-201ENST00000251739 GINM1Q9NU53 330 aa12.63□□□□□ -0.39
VPS50-201ENST00000251739 MORF4L1Q9UBU8 362 aa12.63□□□□□ -0.39
VPS50-201ENST00000251739 FARP2O94887 1054 aaPredicted RBP12.62□□□□□ -0.39
VPS50-201ENST00000251739 SGPL1O95470 568 aa12.62□□□□□ -0.39
VPS50-201ENST00000251739 CAPN2P17655 700 aa12.62□□□□□ -0.39
VPS50-201ENST00000251739 HOXA7P31268 230 aaPredicted RBP12.62□□□□□ -0.39
VPS50-201ENST00000251739 BACE1P56817 501 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms